Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq1997 168 9e-37 >seq1997 Length=47448759 Score = 168 bits (186), Expect = 9e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 197398 CCGCTAAATATCTCAAACGCGACAGATATTGAGAACGTGGCTTGGAACGGCCCTAAAATC 197457 || ||||| |||||| | ||||| ||||||||||| || ||||| || || |||| Sbjct 14353217 CCACTAAACATCTCAGTAGACACAGACATTGAGAACGTCGCCTGGAATGGTCCCAAAAAT 14353276 Query 197458 GCTTTAGCATTTGCCAATCCTAAAGACGTTACCATAATGGATAAAAGCTACCAGGGTCGT 197517 ||| | || ||||| ||||| ||||| || | | | ||||| |||||||||||||| || Sbjct 14353277 GCTCTCGCTTTTGCAAATCCCAAAGATGTAATCCTTATGGACAAAAGCTACCAGGGCCGA 14353336 Query 197518 GTCAACATTAGCCAAACCAACTACTCTTTGTGCATTAGGAACCTGACCGTGAATGATGCT 197577 | | ||| | | || | ||||| ||| ||| || || ||||| |||| ||||| Sbjct 14353337 CTAAGCATCACCAAATGGAGTTACTCCCTGTACATCAGCAATCTGACTCTGAACGATGCA 14353396 Query 197578 GGTTCGTATAAGGCCCAAATTAACAAAAATAATTCCCAAGTCACCACCAAGGAGGAATTT 197637 || || || || ||||| || |||||||| ||||| |||||||||| ||||| |||||| Sbjct 14353397 GGCTCCTACAAAGCCCAGATAAACAAAAAGAATTCTAAAGTCACCACTAAGGAAGAATTT 14353456 Query 197638 ACTCTG 197643 || ||| Sbjct 14353457 ACCCTG 14353462 Score = 93.3 bits (102), Expect = 6e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 209129 TCATCAAACACCTGTAGTCTGATTTTCCAGTCCTGCTCAAACATGGTATCTTTTAAAACC 209188 ||| | |||||||| || |||| |||| || |||||||||||||| || || || ||| Sbjct 14266398 TCACCGAACACCTGCAGCCTGACGGTCCATTCTTGCTCAAACATGGTCTCCTTCAACACC 14266457 Query 209189 CTCATAATATATATGTTAGCATCCTCTTTTTGAACGCGAGACAAATATAACGCACCGGAC 209248 || | || || ||||| ||||||||||| || || ||||| || | | || Sbjct 14266458 CTGAAGATGTAGATGTTGGCATCCTCTTTCTGGACATTAGACATGTACAGTACGCCACTT 14266517 Query 209249 TGGGAATCCAATCGAACTCGCCCTTTGAATTTATTGTCAAAATATTTTAAGCGTTTTACA 209308 || | ||| | || || | ||||| ||| |||| ||| | || | | | | | ||| Sbjct 14266518 TGAGCATCGAGTCTGACCCTGCCTTTAAATCTATTTTCATAGTACCTAAGTCTTCTGACA 14266577 Query 209309 TCCCAATCCGCTATCTTTTGATCATAGGTACAAAACCATGTAAT 209352 ||||| || || ||||| | | || ||| ||||||| || || Sbjct 14266578 TCCCAGTCTGCAATCTTCAGGTTGTAAGTATAAAACCAGGTTAT 14266621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702064117601200