Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq435 289 3e-73 seq798 264 1e-65 seq1004 244 1e-59 seq2320 116 4e-21 seq699 114 2e-20 seq1882 107 2e-18 seq1721 107 2e-18 >seq435 Length=190850796 Score = 289 bits (320), Expect = 3e-73 Identities = 533/770 (69%), Gaps = 16/770 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| | || |||| |||| || || || || |||||||||| Sbjct 47340669 CATCACTCCCATCCTCTGATACTTGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 47340611 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 47340610 CCAGTGAAATATTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAA 47340553 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | |||| || ||| || || || ||||| || ||| ||| |||||| | Sbjct 47340552 ACCCAGTTCCAGCATAAGTCTGTCTGCTACAAACTCAATGCATTGCTTCATTAGAGTGCA 47340493 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTA 37107 || | ||||| || || || || | || || ||| || | | || |||| | Sbjct 47340492 ATTCTTCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAGCTCCTGTT-CTATCCGAA 47340434 Query 37108 CAGCATCTTTAACTATATTAACAATAACT---TCTTCAGTTGGGGGATATTTTAAATATT 37164 ||||| ||| ||| | | | ||| || || | ||| | | || | || Sbjct 47340433 TAGCATTGATAATTATTT---CTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGCTGTT 47340377 Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 | |||| | || ||||||||||| |||||||| |||||||| || || | |||||||| Sbjct 47340376 TGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAG 47340317 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284 |||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| | Sbjct 47340316 AAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAAC 47340257 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 |||||||||| || ||||| ||||| ||||| ||||| | || | ||| | || | Sbjct 47340256 CAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTCT 47340197 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | || |||||| ||||||||||| || || ||||| || |||| Sbjct 47340196 CTTTGTCCCCAATCCAGGGCAAGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTT 47340137 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 |||| || || |||||||| | |||| | |||| |||| ||||| ||||| || | Sbjct 47340136 CAATGGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGA 47340077 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 ||||||||||||||| || || ||||| || || || || || ||||| ||||| | | Sbjct 47340076 GACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGG 47340017 Query 37525 CTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 |||| | |||| ||||| || | ||| | || | ||||||||||| ||||| ||| Sbjct 47340016 CTTCTG-TAATCTGAACTTCTTGGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCA 47339958 Query 37584 TCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 ||||| |||||||||||||| ||||||| |||||| | ||| || || Sbjct 47339957 TCACTTGCTGCAAAGAAAGCCAGAACATGGGATATAAAGTATCTCTCCTC 47339908 >seq798 Length=25304 Score = 264 bits (292), Expect = 1e-65 Identities = 526/769 (68%), Gaps = 14/769 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || | || || |||||||||| Sbjct 1708 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAGAGAAGTTAGTCTTTCCTT 1650 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 |||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 1649 GCTGTGAAATATTCTCCATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAA 1592 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | |||| || ||| || || || ||||| || |||| || | |||| | Sbjct 1591 ACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGTGCA 1532 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTA 37107 || || ||||| | || || || | || || ||| ||| | | || |||| | Sbjct 1531 ATTCATCCCAATGAACTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTT-CTATCCAAA 1473 Query 37108 CAGCATCTTTAACTATATTAACAATAACT---TCTTCAGTTGGGGGATATTTTAAATATT 37164 ||| ||| ||| ||| ||| | | ||| || || | ||| | | || | || Sbjct 1472 CAGAATCAATAATTAT-TTATC--TTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTT 1416 Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 | |||| | || ||||||||||| |||||||| |||||||| || || | |||||||| Sbjct 1415 TGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAG 1356 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284 |||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||||| | Sbjct 1355 AAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAAC 1296 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 |||||||||| | ||||| ||||| ||||| ||||| | ||| ||| | || | Sbjct 1295 CAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGT 1236 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTT 37404 | || |||||| | ||| |||||||| || ||||| || |||| Sbjct 1235 CTTTGTCCCCAATCCAGCACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTT 1176 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 |||| || || |||||||| | |||| | |||| |||||||||| ||||| | | Sbjct 1175 CAATGGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATATAAGTGTCAATACGGA 1116 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 ||||||||||||||| || || ||||| || || || || || ||||| ||||| | | Sbjct 1115 GACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGG 1056 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||| | | ||||| | | ||| | || | ||||||||||| ||||| |||| Sbjct 1055 CTTCTGTGATCTGAACTTACTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCAT 996 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 || | ||||||||||||| ||||| | |||||| | |||||| || Sbjct 995 CATTCACTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTTTCCTC 947 >seq1004 Length=155834243 Score = 244 bits (270), Expect = 1e-59 Identities = 520/766 (68%), Gaps = 13/766 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | |||| || || |||| |||| || || || || |||||||||| Sbjct 136911635 CATCACTCCCATCCTCTGATGCTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 136911577 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| ||||| |||||||| ||||||||||| | || | | | | | ||| | Sbjct 136911576 CCAGTGAAATATTCTCCATAAAGTCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAA 136911519 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | |||| | ||| || || || ||||| || | ||||| |||||| | Sbjct 136911518 ACCCAGTTCCAGCTTAAGTCTGTCTGCTACAAACTCAACGTATTGCTTCATTAGAGTGCA 136911459 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTA 37107 || || ||||| || || || || | || || ||| || | | || |||| | Sbjct 136911458 ATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAGCTCCTGTT-CTATCGGAA 136911400 Query 37108 CAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAA 37167 ||||| ||| ||| || | | || || | | ||| | | || | ||| | Sbjct 136911399 CAGCACTGATAATTAT-TTCTTACTCTCTCCT-CTGATGGTTTGTGTCCTAGGTGTTTGA 136911342 Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 ||| | || ||||||||||| |||||||| || ||||| || || | ||||||||||| Sbjct 136911341 ACATCAGGCAAGCAAAATCACAGTGTAAACCCTCCTCTCTGCTAATAAGTTCATTAGAAA 136911282 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | | | | ||||| | |||| ||| || | ||| ||||| | ||||||||| |||| Sbjct 136911281 ATATGAGGCTAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAG 136911222 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347 ||||||| || ||||| ||||| ||||| ||||| | ||| ||| | || | | Sbjct 136911221 AAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCCTCTT 136911162 Query 37348 AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAA 37407 || |||||| | |||||||||||| || ||||| || ||||||| Sbjct 136911161 TGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAA 136911102 Query 37408 TTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAAC 37467 | || || |||||||| | |||| |||| |||| ||||| ||||| || || Sbjct 136911101 TGGCATTGAAGAGAAATTCCCTTTCCCTGGGATCTTTTATGTAAGTGTCAATGAG---AC 136911045 Query 37468 TATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTT 37527 ||||||||||||| || || ||||| || || || || || ||||| ||||| | |||| Sbjct 136911044 TATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTT 136910985 Query 37528 CAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCAC 37587 | | | ||||| || | ||| | || | ||||||||| ||||| ||||| | Sbjct 136910984 CTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCGGGTTTTCATTCACTATGCCATCGC 136910925 Query 37588 TAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 | |||||||||||||| ||||| | |||||| | ||| || || Sbjct 136910924 TCGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTCTCCTC 136910879 >seq2320 Length=142054208 Score = 116 bits (128), Expect = 4e-21 Identities = 295/443 (67%), Gaps = 7/443 (2%) Strand=Plus/Minus Query 37193 TAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCt 37252 |||||| ||||| || || || | ||||||||||| || | || | ||| | | | Sbjct 131601593 TAAACCCTCATCACTGCTAATAAGGTCATTAGAAAATGTGAGGCCAGACATCATTCATTG 131601534 Query 37253 ttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGC 37312 ||| || | ||| ||||| ||||||||| ||| || |||| | ||||| ||| || Sbjct 131601533 TTTCTTGAGCCAGAATATCAATGCAAAAGAACCATAAGAGAAGGTGCCTTCTACTATGGC 131601474 Query 37313 AAATGCTACAAGACGTGTACCGAAAGTTGAA-CTATAATCAGAAATCCAtttttttGTCC 37371 ||| ||| | | |||| ||| || | | || | || || |||| | || Sbjct 131601473 AAAGGCTGCCACACGTTCTCCGTGGGTAGCATCTTTGTTCTCAA-TCCAACACAAGGCCC 131601415 Query 37372 AATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttttt 37431 ||||||||| || ||||| || ||||||| || || |||||||| | ||| Sbjct 131601414 AATCTGCCTCCTTCTTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAATTCCCTTT 131601355 Query 37432 CTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTT 37491 ||| | ||| ||| | | || ||| | | | | ||| ||| ||||| | || |||| Sbjct 131601354 CTTTGTTGTCT-TTA-ACATGTGTCAGTAAAGAGATTATCCATGTCAGAATAGATGTTTT 131601297 Query 37492 CAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAA 37551 | ||||| || || || ||||| || || | ||| | ||||| || | | || Sbjct 131601296 CCATAGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCCTGAACTTCTTGGACAA 131601240 Query 37552 ACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACAT 37611 | || | |||||||||| |||||| ||||||| ||| ||||||||| |||| || Sbjct 131601239 ATTGCTCCACCAAGTTTTCATCAACTATGCCATCACATGCTACAAAGAAAGTCAGAATAT 131601180 Query 37612 ATTTTATAAAATGTCTTTCATCA 37634 |||||||| |||| | ||| Sbjct 131601179 GGGATATAAAATATCTTACCTCA 131601157 >seq699 Length=159171411 Score = 114 bits (126), Expect = 2e-20 Identities = 130/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| |||||||| | ||||| || | || ||| |||||||| || || ||||| || || Sbjct 59756747 ATCTTTTATATAAATGTCAATAAGGAGACCATATATTTCAGAATGTATGTTTTCCATGGC 59756688 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCT 37557 || || || ||||| ||||| | ||||| | |||| ||||| || | ||| | || Sbjct 59756687 AATTTGGAAGCCATAGAAACAGCGGGCTTCTG-TAATCTGAACTTCTTGGCTAAATCGCT 59756629 Query 37558 TAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAAC 37609 | ||||||||||| |||| |||||||| ||||||||||||| ||||| Sbjct 59756628 CCACCAAGTTTTCATTTACTACGCCATCACTCACTGCAAAGAAAGCCAGAAC 59756577 >seq1882 Length=96796970 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| |||| Sbjct 92365323 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTTT 92365264 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || || || | Sbjct 92365263 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 92365204 Query 37318 CTAC 37321 | || Sbjct 92365203 CCAC 92365200 >seq1721 Length=108792865 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | || ||||| | |||| ||| || Sbjct 98462391 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 98462450 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||| ||||| ||| Sbjct 98462451 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 98462510 Query 37320 AC 37321 || Sbjct 98462511 AC 98462512 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 98460608 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 98460666 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| ||||||||||| Sbjct 98460667 CCAGTGAAATATTCTCCATAAAGTCAAATGGATT 98460700 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| |||| ||||| ||||| || | ||||||||||||||| ||||| ||||| || || Sbjct 98464462 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGAATGTTTTCCATGGC 98464521 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| ||||| | ||||| Sbjct 98464522 AATTTGGAAGCCATAGAAACAGCGGGCTTC 98464551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592211626748200