Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1644 129 5e-25 seq435 129 5e-25 seq1 120 2e-22 seq274 93.3 3e-14 seq2147 91.5 1e-13 >seq1644 Length=117903854 Score = 129 bits (142), Expect = 5e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 57521655 AGGCCCGTGATGTGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 57521714 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| |||| | Sbjct 57521715 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 57521774 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 57521775 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 57521818 Score = 123 bits (136), Expect = 2e-23 Identities = 187/261 (72%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 112079 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTC 112138 || ||||||| || || || || || ||||||||||| ||||| || || || || Sbjct 40215876 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 40215817 Query 112139 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 112198 | | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 40215816 TTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 40215757 Query 112199 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 112257 |||| || || |||||||| || | |||| | ||| | || | | || || || Sbjct 40215756 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 40215698 Query 112258 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 112316 | || || |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 40215697 CTGAG------CGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 40215645 Query 112317 CACGGCCACGATACCGTTCAG 112337 ||| || ||||| | ||| || Sbjct 40215644 CACAGCGACGATGCAGTTTAG 40215624 Score = 102 bits (112), Expect = 7e-17 Identities = 127/173 (73%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| || Sbjct 57526159 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATC 57526218 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| || ||| | |||| |||||||| ||| || ||||| || Sbjct 57526219 CCCTTCTTCTCTGGCGGAAAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 57526278 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 |||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 57526279 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 57526330 >seq435 Length=190850796 Score = 129 bits (142), Expect = 5e-25 Identities = 188/261 (72%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 112079 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTC 112138 || ||||||| || || || || || ||||||||||| ||||| || || || || Sbjct 174408235 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 174408294 Query 112139 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 112198 | | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 174408295 TTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 174408354 Query 112199 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 112257 |||| || || |||||||| || | |||| | ||| | || | | || || || Sbjct 174408355 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 174408413 Query 112258 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 112316 | || || |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 174408414 CTGAG------CGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 174408466 Query 112317 CACGGCCACGATACCGTTCAG 112337 ||| || ||||||| ||| || Sbjct 174408467 CACAGCGACGATACAGTTTAG 174408487 >seq1 Length=210400635 Score = 120 bits (132), Expect = 2e-22 Identities = 186/261 (71%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 112079 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTC 112138 || ||||||| || || || || || ||||||||||| ||||| || || || || Sbjct 66233987 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 66234046 Query 112139 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 112198 | | ||| | |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 66234047 TTAAAGGGCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 66234106 Query 112199 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 112257 |||| || || |||||||| || | |||| | ||| | || | | || || || Sbjct 66234107 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 66234165 Query 112258 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 112316 | || || |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 66234166 CTGAG------CGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 66234218 Query 112317 CACGGCCACGATACCGTTCAG 112337 ||| || ||||| | ||| || Sbjct 66234219 CACAGCGACGATGCAGTTTAG 66234239 >seq274 Length=204313951 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || ||||||||||| ||||| || || || || | | ||||| |||||| || || Sbjct 127557828 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 127557769 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 112205 ||||||||||| ||||| |||||||| ||||||| ||||| || Sbjct 127557768 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTT 127557725 >seq2147 Length=50472720 Score = 91.5 bits (100), Expect = 1e-13 Identities = 175/256 (68%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || | || || || ||||| || | || || || || | Sbjct 4191962 ATGAGCTCCTTGTGGAGGTTCCTGGAGTTCTCTACTGAGAACGAAATTAATTCTATCCTT 4191903 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 4191902 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 4191843 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| | || || || | |||| | ||| | || | | || || || | Sbjct 4191842 CTGTTTACCTTCTATCGAGGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTTC 4191784 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318 ||| || |||| ||||| || || || || ||||| ||||||| | | ||| Sbjct 4191783 TGAGT------GGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTTTGGGACA 4191730 Query 112319 CGGCCACGATACCGTT 112334 | || ||||| | ||| Sbjct 4191729 CTGCGACGATGCAGTT 4191714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408546858716465