Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq1556 96.9 1e-15 >seq1556 Length=121768101 Score = 96.9 bits (106), Expect = 1e-15 Identities = 186/268 (69%), Gaps = 11/268 (4%) Strand=Plus/Minus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 ||| | |||||| ||| | ||||| |||| || || || || || | | |||||||| Sbjct 21531589 TGGGTTTTATGGAAGAGTGGCTCCACGGTCTGGCTTGGCTGCAAACACT-TCATTGATGT 21531531 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 ||||||||||| || ||| ||| | ||| || || ||||||||||| | ||||||| Sbjct 21531530 AGGTGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGCTTAATTT 21531471 Query 1085 TAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGA 1141 | || || ||| ||| | | || ||||||| | ||||| ||| | ||||||| Sbjct 21531470 TGGCAAAGAAAAG---TTTGAAGTCAAAAAAGGTGATCGAATTGCACAGCTCATTTGTG- 21531415 Query 1142 AAAGGCTGTTTTT--CCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGT 1199 || || | ||||| ||| || || ||| | | || || || | |||||||| Sbjct 21531414 AACGGATTTTTTTACCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCAAAAGGGGT 21531355 Query 1200 TCTGCAGGATTTGGGTCTAC-CGGAAGA 1226 || | ||| ||||| || || |||||| Sbjct 21531354 TCAGGAGGTTTTGGTTCCACTGGGAAGA 21531327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138658206580980