Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2190 190 4e-43 seq1004 158 2e-33 seq798 141 2e-28 seq435 132 9e-26 seq9691 127 4e-24 seq2934 104 4e-17 seq1441 91.5 3e-13 >seq2190 Length=49145316 Score = 190 bits (210), Expect = 4e-43 Identities = 188/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||||||||| | || | ||| || ||||| |||||||| ||||||||||| Sbjct 11995061 AGCAGCTGACAGCCGTTGCTGACGTGGGTCATGACCTTTTGTTTGAGCTGGGCCACCTGC 11995002 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | |||||| | ||||| || ||||| || | ||||||| |||||| Sbjct 11995001 TCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 11994942 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 11994941 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 11994882 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| || Sbjct 11994881 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGGGG 11994822 Query 241625 GAC 241627 ||| Sbjct 11994821 GAC 11994819 Score = 131 bits (144), Expect = 3e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 17342247 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCTCGCAGCATGCTCGCCGTGGACGCCAGC 17342306 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| | ||||||||||||||||| |||| |||||| ||||| Sbjct 17342307 TCCGTGTTCTGGCTCTTGAGGTC-TTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 17342365 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTT-ACGTTCCGCCTT 241593 ||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||| Sbjct 17342366 TTGCGTTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGGCGCTCCGCCTT 17342425 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||| ||||| ||||||||||| || ||| Sbjct 17342426 GATGCGCTCCTGCGTGTCCATGTCGATAGGCGAC 17342459 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/113 (76%), Gaps = 8/113 (7%) Strand=Plus/Minus Query 238928 TGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGTTA 238987 |||||||| ||||||||| | ||||| || | | |||||| | ||||| |||||||| Sbjct 11995022 TGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCCGCGTTC 11994963 Query 238988 TCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 11994962 TCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 11994910 >seq1004 Length=155834243 Score = 158 bits (174), Expect = 2e-33 Identities = 485/734 (66%), Gaps = 32/734 (4%) Strand=Plus/Minus Query 47846 TCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAG 47905 || || ||||| |||||||||||||| ||||| || |||| || || |||||||| ||| Sbjct 136911613 TCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAG 136911554 Query 47906 AGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC---AGGT 47960 || || || | | | | | | || || | | |||| |||||||| || Sbjct 136911553 TCAAATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGCTTAAGTC 136911499 Query 47961 GATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACA 48020 || || || |||| | ||||| ||| || ||| ||||| || ||||| || Sbjct 136911498 TGTCTGCTACAAACTCAACGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCA 136911439 Query 48021 CGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC--TG 48078 | ||||| |||| ||||| | ||||| |||||| | || || | | ||| | Sbjct 136911438 CAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCGGAACAGCA---CTGATAATTATTT 136911382 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAA 48138 |||| | | |||||| ||||||| | ||||| ||| | | || ||| ||||| Sbjct 136911381 CTTA-CTCTCTCCTCTGATGGTTTGTGTCCTAGGTGTTTGA---ACATCAGGCAAGCAAA 136911326 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 || | ||| || || || || | ||| || || | || || || ||| | |||||| Sbjct 136911325 ATCACAGTGTAAACCCTCCTCTCTGCTAATAAGTTCATTAGAAAATATGAGGCTAGGCAT 136911266 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 | || | | ||||||||||| || | || ||||| ||||| ||||||||||| || Sbjct 136911265 CAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 136911206 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-G 48317 |||||| || || || || | || || | | ||| | ||||| |||||| | Sbjct 136911205 CACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCG 136911146 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 ||| ||||| |||||||||||||||| || |||||||| || ||||| |||||| Sbjct 136911145 CAAG-GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG-A 136911088 Query 48378 TCTTGCACTCACCTGCG-TCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCA 48433 || | | |||| | || | || || | |||| || ||||| ||| Sbjct 136911087 AATTCCCTTTCCCTGGGATCTTTTATGTAAGTGTCAATGAG--ACT----ATACATTTCA 136911034 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 || || | || || || || || ||||| || ||||| | ||| || | ||| Sbjct 136911033 GAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGA 136910974 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 |||||| | |||| ||||| | | || ||||| ||||| ||||| || |||||| Sbjct 136910973 ACTTCTTGGCTAAATCGCTCCACCGGGTTTTCATTCACTATGCCATCGCTCGCTGCAAAG 136910914 Query 48554 AAGGCAAGGACATG 48567 || || || || || Sbjct 136910913 AAAGCCAGAACGTG 136910900 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 94054462 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 94054521 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | || |||||||| || |||||| |||||||||| Sbjct 94054522 GCGATGCGGTTCCTCATGCGCTTCCTCTCTGCCTTGATCCGCTCCTGGGACTCCATGTCG 94054581 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 94054582 ATGGGGGAC 94054590 >seq798 Length=25304 Score = 141 bits (156), Expect = 2e-28 Identities = 360/542 (66%), Gaps = 13/542 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||| ||||||| ||||| || | | || || ||||| Sbjct 1693 CTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTGCTGTGAAATATTCTC 1634 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || || || | | | | | | || || | | |||| |||||||| Sbjct 1633 CATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGC 1579 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || || |||| |||| || | | || ||| ||||| || ||| Sbjct 1578 ATAAGTCTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGTGCAATTCATCCCAATG 1519 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 | ||| ||||| |||| ||||| ||||||| |||||| || | || | Sbjct 1518 AACTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCAAACAGAATCAATAATT 1459 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | | || | |||||| ||||||| ||||| ||| | | || ||| Sbjct 1458 ATTTATCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGA---ACATCAGGCAA 1402 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 ||||| || | ||| || || || || | ||| || || | || || || ||| ||| Sbjct 1401 GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCA 1342 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | ||||||||||| || | || ||||| ||||| ||||||| | Sbjct 1341 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGACG 1282 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || |||||||| || || || || | || || | | ||||| ||||| ||| Sbjct 1281 CCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCCCCAATC 1222 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 ||| | | |||||||||||||||||||||| || |||||||| || ||||| |||| Sbjct 1221 CAGCACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAG 1162 Query 48374 AG 48375 || Sbjct 1161 AG 1160 >seq435 Length=190850796 Score = 132 bits (146), Expect = 9e-26 Identities = 474/733 (65%), Gaps = 31/733 (4%) Strand=Plus/Minus Query 47849 CCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGG 47908 || ||||| |||||||||||||| ||||| || |||| || || |||||||| ||| Sbjct 47340644 CCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCA 47340585 Query 47909 AAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGCAGGTGA---T 47963 || || || | | | | | | || || | | |||| ||||||||| | | Sbjct 47340584 AATGGATTC--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGCATAAGTCTGT 47340530 Query 47964 CCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGG 48023 | || || |||| ||| ||| ||| || ||| ||| | || ||||| ||| | Sbjct 47340529 CTGCTACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCTTCCCAATGAGCTTCACAG 47340470 Query 48024 GCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAA 48083 |||| |||| ||||| | ||||| |||||| | | || | | || | | | Sbjct 47340469 GCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCCGAATAGCATTGATAATTATTTCTCTTA 47340410 Query 48084 CGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCC 48143 | | |||||| ||||||| || || ||| | | || ||| ||||| || | Sbjct 47340409 CTCTCTCCTCTGATGGTTTGTGTACTAGCTGTTTGA---ACATCAGGCAAGCAAAATCAC 47340353 Query 48144 TGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCC 48203 ||| || || || || | ||| || || | || || || ||| |||||||| | | Sbjct 47340352 AGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTC 47340293 Query 48204 CCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTG 48263 | | | ||||||||||| || | || ||||| ||||| ||||||||||| ||||||| Sbjct 47340292 CTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTG 47340233 Query 48264 CCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCG 48323 | || || || || | || || | | || | ||||| ||||||| | | Sbjct 47340232 CAGCAAAGGCTACGACACCTTCACCATAGGTAGTCTCTTTGTCCCCAATCCAGGGCAAGG 47340173 Query 48324 CCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGC 48383 ||| ||||| |||||||||| || |||||||| || ||||| |||||| Sbjct 47340172 TCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG------AA 47340119 Query 48384 ACTCACCTGCGTCCGCAAC--ATAGGT-AGTG------AGCAGCTTTGCGTACATCTCAG 48434 | || | | ||| | | | || || |||| || || | ||||| |||| Sbjct 47340118 ATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACT---ATACATTTCAG 47340062 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 | || | || || || || || ||||| || ||||| | ||| || | ||| | Sbjct 47340061 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAA 47340002 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 ||||| | |||| ||||| || || ||||| ||||| ||||| || ||||||| Sbjct 47340001 CTTCTTGGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 47339942 Query 48555 AGGCAAGGACATG 48567 | || || ||||| Sbjct 47339941 AAGCCAGAACATG 47339929 >seq9691 Length=11131 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| | ||||| | | ||| || | ||| Sbjct 3399 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTTTCGCAGCAGGCTCGCCGTGGACGCCAGC 3458 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||||||||||||||| |||| |||||| ||||| Sbjct 3459 TCCGTGTTCTGGCTCTTGAGGGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTCCAGC 3518 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 ||||| |||||| |||| ||| || | | |||| || || | ||| || ||||||||| Sbjct 3519 TTGCGTTTGCGGCACTTGGAGGCGGCGATGAGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 3578 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| ||||| ||||||||||| || ||| Sbjct 3579 TTGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 3611 >seq2934 Length=8975 Score = 104 bits (114), Expect = 4e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || ||| ||| || | ||| | | ||| || | ||| Sbjct 2376 AGGACTTTCTGCTTGAGCTGAGCCCGCTGCTCGCACAGCAGAGTCGCCGTGAATGCCAG- 2434 Query 241475 CCTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | || |||| |||||||||||||||||| |||| |||||| | || Sbjct 2435 -CTCCGTATTCTGGCTCTTGAGAGTCTTCACTTTCTCCTCCAGGCGCGAGATGCGCTTCA 2493 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | ||||| |||||| |||| ||| || ||| |||| || | | ||| || ||||||| Sbjct 2494 GCTTGCGGTTGCGGCACTTGGAGGCGGCGAAGGGGTTGCGCAACCGCTTGCGCTCCGCCT 2553 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||| |||| |||||| ||| || ||| Sbjct 2554 TGATGCGCTCCTACGTGTCCATGATGATGGGCGAC 2588 >seq1441 Length=130397257 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||| | || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 67481501 GTGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 67481442 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| || |||||||| || |||| || |||||| ||| Sbjct 67481441 -TTGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGGGGTACCTGTCTCTGTCTG 67481383 Query 213647 GGAC 213650 ||| Sbjct 67481382 AGAC 67481379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931367394707200