Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq435 143 5e-29 seq1004 141 2e-28 seq798 138 2e-27 seq1721 84.2 4e-11 >seq435 Length=190850796 Score = 143 bits (158), Expect = 5e-29 Identities = 381/570 (67%), Gaps = 19/570 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| | ||| |||||||||| | ||| | || Sbjct 47339810 GATATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCC-AGGAGGTGGAC 47339868 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 ||| |||||||||| |||| | | || | || || ||| | || | || Sbjct 47339869 CTGTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCGGAGGAGAGATACTTTATATCC 47339928 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || |||| ||||||||||| |||||| ||||| || || || || ||| Sbjct 47339929 CAT--GTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGT 47339986 Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 |||| | | ||||| ||| ||| || ||| |||||||| || ||||| || || Sbjct 47339987 GATTTAGCCAAGAAGTTCAGATTACA--GAAGCCTGCTGTTTCTATGGCTTCCAAATTGC 47340044 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA 25766 ||| ||||| | || ||||| ||||| | || || || || ||||| | ||| Sbjct 47340045 CATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATAAAAGA 47340101 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | ||| || || || || |||||| || || || | |||||| ||| Sbjct 47340102 TCCCAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAA 47340161 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGG 25885 || ||| || || ||||| | || || | |||| | ||| || | | | Sbjct 47340162 TGCAGATTGGACCTTGCCCTGGATTGGG-GACAAAGAGACTACCTATGGTGAAGGTGTCG 47340220 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 ||||||||||||| ||||| |||||||| || ||||| ||||| |||| ||||||| Sbjct 47340221 TAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGC 47340280 Query 25946 TCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 ||||| | | | |||| ||||| || || ||||| || || || || ||||| || Sbjct 47340281 TCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGAT 47340339 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 |||||| | ||| | |||||||| |||||| Sbjct 47340340 GAGGGTTTACACTGTGATTTTGCTTGCCTG 47340369 >seq1004 Length=155834243 Score = 141 bits (156), Expect = 2e-28 Identities = 304/446 (68%), Gaps = 15/446 (3%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| |||| ||||||||||| ||||| |||||||| || || | | ||| ||| Sbjct 136910901 ACGTTCTGGCTTTCTTTGCAGCGAGCGATGGCATAGTGAATGAAAACCCGGTGGAGCGAT 136910960 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 | | | ||||| ||| | || ||| |||||||| || ||||| || ||||| | Sbjct 136910961 TTAGCCAAGAAGTTCAGATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGG 136911020 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTC--TGATGACGTACATTACAGACGTCGC 25772 |||| | || ||||| ||||| || || ||| || ||||| | ||| | Sbjct 136911021 AAAACATACATTCTGAAATGTAT----AGTCTCATTGAC-ACTTACATAAAAGATCCCAG 136911075 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 || || || || || |||||| || || || | |||||| |||||| Sbjct 136911076 GGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGA 136911135 Query 25833 GTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| || ||||| ||| |||| ||||| | ||| || || | ||||| Sbjct 136911136 TTGGGCCTTGCGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAACGCGTCGTAGC 136911192 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||||||||| ||||| |||||||| || ||||| ||||| |||| ||||||||||| Sbjct 136911193 CTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAA 136911252 Query 25950 GCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | | | | |||| ||||| | || ||||| || || || || ||||| || |||| Sbjct 136911253 G-AAACGAGGACTGATGCCTAGCCTCATATTTTCTAATGAACTTATTAGCAGAGAGGAGG 136911311 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTG 26034 || | ||| | |||||||| |||||| Sbjct 136911312 GTTTACACTGTGATTTTGCTTGCCTG 136911337 >seq798 Length=25304 Score = 138 bits (152), Expect = 2e-27 Identities = 301/443 (68%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| |||| |||||||||| |||||| ||||| || || || || ||| ||| Sbjct 969 ACGTTCTGGCTTTCTTTGCAGTGAATGATGGCATAGTAAATGAAAACTTGGTGGAGCGAT 1028 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 | | | | |||| ||| | || ||| |||||||| || ||||| || ||||| | Sbjct 1029 TTAGCCAGTAAGTTCAGATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGG 1088 Query 25715 AAAATGTGCACTCTGAGGTGTAT-GCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 |||| | || ||||| ||||| | | | ||| || || || | ||| | | Sbjct 1089 AAAACATACATTCTGAAATGTATAGTCTCCGTATTGAC-ACTTATATAAAAGATCCCAAC 1147 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGG 25833 || || || || || |||||| || || || | |||||| |||||| Sbjct 1148 GAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGAC 1207 Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAG-CGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| || ||||| | || || |||||| | ||| || || | |||||||| Sbjct 1208 TGGGCCTTGTGCTGGATTGGG-GACAAAGACGCTACCTATGGTGAACGCGTCGTAGCCTT 1266 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 |||||| ||||| ||| |||| || ||||| ||||| |||| |||||||||||| | Sbjct 1267 TGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAG-A 1325 Query 25953 GAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 | | |||| ||||| || || ||||| || || || || ||||| || |||||| Sbjct 1326 AACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAGGGTT 1385 Query 26012 TCCACAGAGATTTTGCCTGCCTG 26034 | ||| | |||||||| |||||| Sbjct 1386 TACACTGTGATTTTGCTTGCCTG 1408 >seq1721 Length=108792865 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| || ||||| ||||| |||| |||||| Sbjct 98462512 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 98462453 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || ||||| || || || || ||||| || Sbjct 98462452 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 98462394 Query 26004 CGAGG 26008 |||| Sbjct 98462393 TGAGG 98462389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928679871995200