Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 327 1e-84 seq1820 170 2e-37 seq1864 161 1e-34 seq1334 107 2e-18 seq274 95.1 1e-14 >seq1 Length=210400635 Score = 327 bits (362), Expect = 1e-84 Identities = 674/993 (68%), Gaps = 17/993 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || |||| ||| |||| ||| || | |||||| || |||| || ||| Sbjct 92327249 TGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTA 92327308 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| || | || ||||||| || ||| || | ||||| | | Sbjct 92327309 TTGGCAAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 92327365 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | |||||| || | ||| || ||||| ||||||| || | |||||| Sbjct 92327366 CACACCGAGCGCACGTGCACCCCATCGCAGGGTGGGTAGGGAGCTCCCTTGGAAACGTCA 92327425 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | ||| |||||||| || ||||| Sbjct 92327426 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCGTGCATGTCAGACAAATCGTAC 92327485 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | || |||||| | |||| || | ||| | ||| ||||| | Sbjct 92327486 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCGGGAATCCTCTGGATGGTAGCCCAGA 92327543 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 | | || || |||||||| ||||| | | ||| ||||| |||| | |||| | Sbjct 92327544 GATACTCATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGATTTTTTCAT 92327603 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | | || || | || || || | || |||||||| || ||||| || || | Sbjct 92327604 TCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAA 92327663 Query 160465 TCGGTATGG---GTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 ||| | || ||| || | |||| | || ||||| | || | ||| | Sbjct 92327664 GGGGTGTTTCCAGTGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAACTTTCCAT 92327720 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | | | | | | || || |||||||| | || | | |||||| | ||||| | Sbjct 92327721 TAATGACCTCATACCGTTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTT 92327780 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | || |||| | || | | | || |||| | |||| || |||||||| || || | Sbjct 92327781 CCAGGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 92327840 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 || || || |||| || | ||||||| ||||||||| || || |||| ||| | Sbjct 92327841 TAGGGAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCCCTCATTGCGTAGA 92327900 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 ||||| ||||||| || | || ||||| || |||||||| || || || || || ||| Sbjct 92327901 GGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 92327960 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG-- 160819 | | | |||||||||||||| ||| |||||| || | || |||| ||| | ||| Sbjct 92327961 CCAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTG-CAGCT 92328019 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||| | | | || | ||| |||||| || | |||||| | ||||||||| || Sbjct 92328020 AAATAGGA-ATCCTCGGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 92328078 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||||||||| | | ||| || | ||| || ||||| ||||| | ||| ||||| || || Sbjct 92328079 GATGGCCCTCAATAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 92328138 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 ||| |||||||| | ||| || ||| |||| | | | || || ||| ||||||| Sbjct 92328139 TATTGGAAACTCTGCCTCTTCTTTACTAAGGGGCTCTACAATATATTTGCGCCTCTTGAT 92328198 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| ||| ||| || | |||||||| ||||| Sbjct 92328199 GAAAGAATTACAGTCACTGGTCATGTTTATATA 92328231 >seq1820 Length=98464013 Score = 170 bits (188), Expect = 2e-37 Identities = 226/314 (72%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || | || || || |||||||| ||| Sbjct 83115827 TAGAGGGTGAGGCAGGGTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGACAC 83115768 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| ||||||| |||||||||||| || || | ||||||||| |||| Sbjct 83115767 ATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGAGT 83115708 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| ||| || ||||||| || ||||| | ||| || || || || || | | | Sbjct 83115707 CCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATAGCTG 83115648 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||||||||||| | || |||||||| || || | |||||||| || || ||| Sbjct 83115647 TTGCTGAAGGTGGCTACATTTTCCGGGCTTAGAGCTTTCTTTTTCTGCCATGTCACGATC 83115588 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 || || || | || ||||| || ||||| | ||||| || || || ||| ||||| Sbjct 83115587 AGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTATTTAGCTGTTCT 83115528 Query 168450 CGCTCATCTTGAGT 168463 | ||||| || || Sbjct 83115527 CTTTCATCCTGGGT 83115514 Score = 105 bits (116), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 167894 GTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACT 167953 ||| || ||||| |||| || || |||| ||| |||||||| || || || ||| | Sbjct 83118532 GTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTCCCCACCTGATT 83118476 Query 167954 CTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAAC 168013 ||| || ||||| | || | |||||||| ||| || || ||||| | || | || Sbjct 83118475 CTTAGGGTCTTTGAACTGGAGGATGCTAGTAACAGACGTGGTCCCATTTGGGTGAGACAC 83118416 Query 168014 GGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGG 168073 || || |||||||| ||||||||||| | ||||||||| | || | || || || Sbjct 83118415 AGTCTTTGTGCTGTTTTCAATCCCTGACTGAGGAACCTTCCAGTAGATCATGGGGGCTGG 83118356 Query 168074 TCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || |||||||| || ||||||| Sbjct 83118355 GCGGGCAGTGGCAGAGCAAGTGATATTTA 83118327 >seq1864 Length=13681 Score = 161 bits (178), Expect = 1e-34 Identities = 224/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||| | || | || || || ||||||| ||| Sbjct 9124 TAGAGGGTGAGGCAGGGTGTTCCTGAGATCATCCCATAACCAAAGGTACTGAAGAGACAC 9183 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| ||||||| |||||||||||| || || | ||||||||| |||| Sbjct 9184 ATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGAGT 9243 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| ||| || ||||||| || ||||| | ||| || || || || || | | | Sbjct 9244 CCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATTGCTG 9303 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | |||||||||||| | || || ||||| || || | |||||||| || || ||| Sbjct 9304 TTGCTGAAGGTGGCTACATTTTCAGGGCTTAGAGCTTTCTTTTTCTGCCATGTCACAATC 9363 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 ||||| || | || || || || ||||| | ||||| || || |||||| ||||| Sbjct 9364 AGAACTTCGTAGGTAGTTTGTAGAGAGCATCTTAAGGAAGCAGGTGTATTCAGCTGTTCT 9423 Query 168450 CGCTCATCTTGAGT 168463 | ||||| || || Sbjct 9424 CTTTCATCCTGGGT 9437 >seq1334 Length=132174527 Score = 107 bits (118), Expect = 2e-18 Identities = 207/303 (68%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 160084 CGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGT 160143 |||| || | | ||| || || || || ||||| || || ||| || || ||||||| Sbjct 1924316 CGTCTACCTTTGGGTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGAATCCAGT 1924260 Query 160144 GCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGT 160203 ||| ||| |||| ||| |||| |||| | || ||| | || |||||| || Sbjct 1924259 GCAAGTCCCCGGCCCCATACACACAGATCGCCCGCTGGTGGATTCCAGAGCAAGGGCCGT 1924200 Query 160204 ACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCG 160263 | | || || | | ||| || |||| ||||||||| || | |||||| || | Sbjct 1924199 AAGGGGCACCCTGACTGATGTCTCCCTCGTGACCCTGCCACTTGACCAGCCTGGCAATAG 1924140 Query 160264 CCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGG 160321 |||||| ||| ||||||| ||| ||||||| | || || | | ||| | Sbjct 1924139 AAATCATGTCTGAGATGTCGTACTTGCGGTGGTGGGGAACAGAGCCCGGCATCCACCGTG 1924080 Query 160322 CATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTC 160381 || ||||| ||||||||||| |||||||| ||||||||||| ||||| || |||||| Sbjct 1924079 CA--CGCTGAAGGGTGGCCCAGAGGTGTTCATCGGGGCTGTAGGTGTCTTTTACCCATTC 1924022 Query 160382 CAT 160384 || Sbjct 1924021 AAT 1924019 >seq274 Length=204313951 Score = 95.1 bits (104), Expect = 1e-14 Identities = 198/291 (68%), Gaps = 7/291 (2%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| |||| || ||| || | ||| | ||| ||| || ||| | || Sbjct 180863648 CAGATGCTCATCCAAACATCAGATGGCAAAGAGGTCCAAGTCCATGTCAAAATTAGTGGC 180863589 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || || ||||| | || | | |||| | ||| | ||| || Sbjct 180863588 AAACAAGTGGTGC---TTACACAGCATCCATTTCAAGCCACCGGCTCTGAAAATGCACAC 180863532 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| | | ||| || || ||||| || ||||| |||| ||||| | || ||||| || Sbjct 180863531 TGAATGCACGTGGACCCCATTGCAGGGTGGGTAGGGAGCACCTTTGGAAACATCACCCTC 180863472 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGT- 160290 | ||||||||||| ||||||||| | | | |||||||| || || ||| || | Sbjct 180863471 CAACTACTGCCACTTGACAAACCTGACAACGGTATGCATGTCAGACAAGTGGTACTTATG 180863412 Query 160291 ACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCC 160340 || | ||||| | | ||||| || | || || | ||| | ||||||| Sbjct 180863411 ACTT--GGGGAGAGTGAGCCGGGGACTTCAGGAATCCTCTGGATGGTGGCC 180863363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577116707515800