Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq848 87.8 9e-13 seq1441 82.4 4e-11 >seq848 Length=158406734 Score = 87.8 bits (96), Expect = 9e-13 Identities = 97/129 (75%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | |||||||||||| | || ||| | |||||| || | | |||||| || Sbjct 81182111 CATAAAGAGATCTGGAATCCAAAGGGC---AAAAAGATCTCTGGCACGCTGTTCTTCCTT 81182055 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| |||||| |||| ||| ||||| ||||| || ||| | ||||| || || | ||| Sbjct 81182054 TCCTATATTCTTCTTTAAATCAAAGAATTCAAAGATGTCTAAATGCCAAGGCTCCAGATA 81181995 Query 26053 GATAGCAAA 26061 |||||||| Sbjct 81181994 AATAGCAAA 81181986 >seq1441 Length=130397257 Score = 82.4 bits (90), Expect = 4e-11 Identities = 100/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || | ||| |||||||| | ||| |||| | |||||| || | | ||||||||| Sbjct 67479853 CATGAAGAGATCCGGAATCCAAAGAGCAAAAAAAAGATCTCTGGCACGCTGTTCTTCTTT 67479794 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCATGGTTCTAAA 26050 ||| ||| ||||| |||| ||| |||||| ||||| || ||| | ||||| || || | Sbjct 67479793 TCCTGTG-TTCTTCTTTAAATC-AAGAAATTCAAAGATGTCTAAATGCCAAGGCTCCAGG 67479736 Query 26051 TAGATAGCAAA 26061 || |||||||| Sbjct 67479735 TAAATAGCAAA 67479725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252996192845375