Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq435 140 5e-28 seq798 132 7e-26 >seq435 Length=190850796 Score = 140 bits (154), Expect = 5e-28 Identities = 299/441 (68%), Gaps = 10/441 (2%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||||||| ||||||||| ||||||||| || | ||| ||| ||| || | Sbjct 47340365 CAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGG 47340306 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||| ||| || ||||| ||||| ||||| ||| || ||||||||| Sbjct 47340305 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAG 47340246 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATTTATTGCTCA 18335 || || || || ||| || || |||| | | |||| || | | || | | ||| | Sbjct 47340245 ATGCCTTCCACTGCA-GCAAAGGCTACGACACCTTCACCATAGGTAGTCTCT-TTGTCCC 47340188 Query 18336 GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 ||||| | ||| ||| | | | ||| || || | || || |||| Sbjct 47340187 CAATCCAGGGCAAGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCAT 47340128 Query 18396 TAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACA 18455 | || | | || |||| |||| ||||||||| |||||||| || | | | ||||| Sbjct 47340127 TGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACA 47340068 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 |||||||||||||| ||||||| || || || || | ||| || | | || || | | Sbjct 47340067 TTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAA 47340008 Query 18516 ATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 |||| || | ||| ||||| || ||||| || ||||| ||||| || ||| | Sbjct 47340007 TCTGAACTTCTTGGCT---AAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTG 47339951 Query 18573 ATGCGAAAAATGCCAAAACAT 18593 ||| || || |||| ||||| Sbjct 47339950 CTGCAAAGAAAGCCAGAACAT 47339930 >seq798 Length=25304 Score = 132 bits (146), Expect = 7e-26 Identities = 300/443 (68%), Gaps = 18/443 (4%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||||||| ||||||||| ||||||||| || | ||| ||| ||| || | Sbjct 1404 CAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGG 1345 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||| ||| || ||||| ||||| ||||| ||| || ||||||||| Sbjct 1344 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAG 1285 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACT---GTATTTATTGCT 18333 | || || || ||| || || |||| | | |||| || | | || ||| | | Sbjct 1284 ACGCCTTCCACTGCA-GCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCCC- 1227 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 || ||||| ||||| ||| | | | ||| || || | || || || Sbjct 1226 CA--ATCCAGCACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 1169 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA--A 18451 ||| || | | || |||| |||| |||||||||||||||||| || || ||| | Sbjct 1168 ATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATATAAGTGTCAAT--ACGGAGACTA 1111 Query 18452 TACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC- 18510 |||||||||||||||||| ||||||| || || || || | ||| || | | || || Sbjct 1110 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCT 1051 Query 18511 GGGATATTGAAT--CTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 | ||| | | | || ||| ||||| || ||||| || ||||| ||||| || ||| Sbjct 1050 GTGATCTGAACTTACTGGCT---AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCA 994 Query 18569 GCAGATGCGAAAAATGCCAAAAC 18591 ||| || || |||| ||| Sbjct 993 TTCACTGCAAAGAAAGCCAGAAC 971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731742046978000