Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq435 118 3e-21 seq699 95.1 4e-14 >seq435 Length=190850796 Score = 118 bits (130), Expect = 3e-21 Identities = 371/566 (66%), Gaps = 9/566 (2%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| || || || |||| || |||||||||||||| || | | | Sbjct 47339783 TTTGTCATTTTCCCCATGGAGTACCACGATATCTGGCAGATGTATAAGAAGGCGGAGGCC 47339842 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | | || || || | ||||| ||| ||||||||| |||| Sbjct 47339843 TCCTTCTGGACCGCCA-GGAGGTGGACCTGTCCAAGGACATTTGGCACTGGGAATCCCTG 47339901 Query 133196 ACTGGGGATGAAAAACATTTTAT-TTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | ||| || | | | ||||| | | ||| || | || || ||||| || |||||||| Sbjct 47339902 AAGCCGGAGGAGAGATACTTTATATCCCATG-TTCTGGCTTTCTTTGCAGCAAGTGATGG 47339960 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || |||||| || | | |||| ||||||||| | | |||||| | Sbjct 47339961 CATAGTAAATGAAAACTTGGTGGAGTGATTTAGCCAAGAAGTTCAGATTACAGAAGCCTG 47340020 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || ||||| | || ||||| |||||||| || |||||| | ||| | || Sbjct 47340021 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCT 47340080 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--AGC 133432 ||||| |||||||| |||||| || | | | | | || ||||| |||||| | | Sbjct 47340081 TATTGACACTTACATAAAAGATCCCAACGAAAGGGAATTTCTCTTCAATGCCATTGAAAC 47340140 Query 133433 GAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGT 133492 || | |||||| | || ||||| | || ||| | | ||||| |||||| Sbjct 47340141 GA--TGCCTTGTGTCAAGAAGAATGCAGATTGGACCTTGCCCTGGATTGGGGACAAAGAG 47340198 Query 133493 GCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGT 133552 | | | || | || |||| || ||||||| ||| || ||||| || || |||| Sbjct 47340199 ACTACCTATGGTGAAGGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGT 47340258 Query 133553 GCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTC 133611 | || ||| || || || ||||| || || || || | | ||||| || ||||| Sbjct 47340259 TC-TTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTC 47340317 Query 133612 TAACGAACTTATTTCAAGGGACGAGG 133637 ||| ||||||||| || || |||| Sbjct 47340318 TAATGAACTTATTAGCAGAGATGAGG 47340343 >seq699 Length=159171411 Score = 95.1 bits (104), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| ||||| Sbjct 74357642 ACCAGTCTCAGCAGTCTTAACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCATG 74357701 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 74357702 GAAGAAGAACTCGGTAGGTGTAAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 74357761 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || ||| ||| | ||||| ||||| |||| || || |||| |||| Sbjct 74357762 CTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 74357821 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 || ||||| || || ||||||||||| || Sbjct 74357822 AATCCGCTTGCCCTCCACGTTCTGCTGCCC 74357851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471549726897085