Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1997 168 6e-37 seq699 84.2 2e-11 seq2320 82.4 6e-11 >seq1997 Length=47448759 Score = 168 bits (186), Expect = 6e-37 Identities = 304/438 (69%), Gaps = 10/438 (2%) Strand=Plus/Plus Query 34204 GGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGT--AGCGTGCCGTGAT 34261 || |||||||| || ||||| ||| ||| ||||| | |||| ||| |||| ||| Sbjct 6458445 GGTGGGTTTTTGAGAATGAATGTGCAGAGTTTATG--ATGTGTGTCAAGCATGCCTCGAT 6458502 Query 34262 AACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG-AGCTCA 34320 |||| || ||||| || | || || | | ||| || | || ||| || || Sbjct 6458503 AACCACAGGCTTTACAAGAATTACCTATTGTTTGCTTCTTTGGATTGAC-ATGCAGATCT 6458561 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || ||||| || |||||||| ||||| | ||||| || ||||| ||||| | || | Sbjct 6458562 GTTTCCGGATTCTCACATTCAGGACAGAGAACAAATTTTTTAATGAATCCATCCAACATG 6458621 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 || || | |||| | || || || || ||||| ||| | || || || || ||| Sbjct 6458622 TCTTGCAGCTTATTCGCCTCATGAGATCCATTGACAATGTAACGGTCATTCTTAACATCA 6458681 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | ||| || || || |||||||| || || || || || || || || | | || || Sbjct 6458682 AACTGGGTCTGTGCTCCCAGCTCACAACCAAAATATTTGGTGGGATACGTTGGAGGCCGA 6458741 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 |||||||||||| | || ||||||||| || || |||||||| || || || || Sbjct 6458742 TTAAGCGCCTTGGCAACGTCAACCATGTTGACTATAACTGTCTTGATTCCATTTCCTTTG 6458801 Query 34561 CCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 || || |||||||| |||| || ||||| |||||||| |||||| ||| | ||| Sbjct 6458802 CCCTCAACCTTGGCAATCAGA--CGGGGCATCTTGTAGCGATAGAACTGGTCTGACACGC 6458859 Query 34619 TGCGGTTAACGTTCACAG 34636 ||||||| ||||| |||| Sbjct 6458860 TGCGGTTGACGTTGACAG 6458877 >seq699 Length=159171411 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | |||||||| ||||| ||| | || ||||||| Sbjct 77802898 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGT 77802839 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| || ||||||||| | ||| || || Sbjct 77802838 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAG 77802779 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || |||||||| |||| | | || | | ||||||||| Sbjct 77802778 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 77802719 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || ||||| || || |||||| |||| Sbjct 77802718 ATCCAGAAAGAGTCGACCTTGCACCTGGT 77802690 >seq2320 Length=142054208 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || ||||| | || || |||||||| ||| |||| | || || Sbjct 106998304 AAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGCTGAACCC 106998363 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| | | | ||||| ||||| || || ||||| | || ||| Sbjct 106998364 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 106998423 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || |||||||| || | ||| || || || ||||| |||| | || || | || ||| Sbjct 106998424 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 106998483 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || ||||| | || | ||||| ||||| || || || Sbjct 106998484 AACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 106998533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412770127443065