Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq930 132 4e-26 seq1721 98.7 9e-16 >seq930 Length=25509 Score = 132 bits (146), Expect = 4e-26 Identities = 675/1063 (63%), Gaps = 51/1063 (5%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| ||| || ||||| ||| | ||| |||| | || ||| | || | Sbjct 17607 ATGCCTTCTATGTCGCAGACCTAGGAGACATTCTAAAGAAACATCTAAGGTGGTTAAAAG 17666 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 | | ||| || | ||| ||||| || || || | || | ||| | || | Sbjct 17667 CCCTTCCTCGTGTGACTCCCTTTTATGCAGTCAAATGTAATGATAGCAGAGCCA-TCATG 17725 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 || ||||| ||||| || || || |||||||||| || ||| || || ||||| Sbjct 17726 AATACCCTTGCTGCTATTGGGACAGGGTTTGACTGTGGTAGCAAGACTGAAATACAGTTG 17785 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | |||||| || | |||| ||||| | | ||| || |||||||| || Sbjct 17786 GTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAACCCTTGTAAACAAGTA 17845 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || ||| || ||| | | |||||| | ||||||||||||||||||||| Sbjct 17846 TCTCA---AAAGTACGCTGCTAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 17902 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | || || ||| |||| || | ||| Sbjct 17903 GAGTTGATGAAAGTTGCCAGGGCACATCCAGAAGCAAAGTTGGTTTTGCGAATTGCCACT 17962 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || || | | || || || || || || || | ||| ||| Sbjct 17963 GATGATTCCAAAGCAATCTGTCGTCTCAGAGTTAAATTCGGTGCCAC------AGC-AGC 18015 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | ||| | ||| || ||| | | | || || || || |||||||||||| Sbjct 18016 AGGCTCCTTTTGGAACGGGTGAAAGAGCTTAATATCGATGTCATTGGTGTCAGCTTCCAC 18075 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 || || || ||||| | || | || | | | || || |||| ||| | || Sbjct 18076 GTAGGAAGCGGCTGTACCAATCCCGAGACCTTTGTGCAGGCAATCACTGATGCCGGCAGT 18135 Query 20744 GCTTTTGACTTTGGCACGCTGATGG-GCTTTGA-CATGTACCTCTTGGATATTGGTGGCG 20801 | ||||||| | || ||||| | | ||| | |||||| || | ||| |||| || | Sbjct 18136 GTTTTTGACATGGGG--GCTGAGGTTGGTTTCAGCATGTATCTGCTTGATCTTGGCGGTG 18193 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||||| || ||| |||| || ||| | ||||| | || || || || | Sbjct 18194 GCTTTCCTGG-ATC--TGAGGATGTGAAGCTTAAATTTGAAGCGATCGCCTGCGTAATCA 18250 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | || ||||| | ||||||| || | | ||| ||| || | ||| || | Sbjct 18251 ACCCAGCATTGGACAAATATTTTCCGTCAGACTCTGAAGTGAGAATCATAGCTGAGCCCG 18310 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAA--AAAGTG 20976 |||| ||| | | | | || || | || | || || | | | ||||| || ||| || Sbjct 18311 GCAGATACCATGTTGCATCAGCTTTCACACTTGCAGTTAATATCATTGCCAAGAAAATTG 18370 Query 20977 TGTTGAAG--ACA------CTCC-----TGGAGATAA------------AAAGTTTATGT 21011 | || ||| ||| ||| || |||| | || ||| | | Sbjct 18371 TATTAAAGGAACAGACTGGCTCTGATGATGAAGATGAGTTGAGTGAACAAACATTTTTAT 18430 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTC 21071 ||||||| |||||||| |||||||| ||||| |||||| | | | | ||||| | | Sbjct 18431 ATTATGTGAATGATGGTGTCTATGGATCATTTAATTGCATACTGTATGATCATGCACATG 18490 Query 21072 CTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCATT 21130 | || | |||| || ||| || || || || ||| | ||| || | |||| Sbjct 18491 TAAAACCCCTTCTGCAAAAGAGACCTACACCA-GATGAGAAATATTATTCATCCAACATT 18549 Query 21131 TGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTT 21190 ||||| || | || |||||| | ||| | |||||| |||| ||| | ||||| || | Sbjct 18550 TGGGGACCAACATGTGATGGCATTGATCGGATTGTTGAGCGCTGTAACCTGCCTGAAATG 18609 Query 21191 CAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 || ||||| || ||| | | |||||||||||||||||||||| Sbjct 18610 CATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA 18652 >seq1721 Length=108792865 Score = 98.7 bits (108), Expect = 9e-16 Identities = 130/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 98138727 TCCAGCATATGGGGACCAACGTGTGATGGCCTCGATCGGATTGTTGAGCGCTGTGACCTG 98138786 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| |||||| | | ||||||||||||||||| |||| || | Sbjct 98138787 CCTGAAATGCACGTGGGTGACTGGATGCTCTTTGAAAACATGGGCGCGTACA-CTGTTGC 98138845 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTC 21294 ||| | || || || |||||||| ||| || | || || | ||||||| || || Sbjct 98138846 TGCTGCGTCTACTTTCAACGGCTT-CCAGAGGCCGACAATCTACTATGTAATGTC 98138899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463463291684400