Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq545 100 5e-16 seq699 84.2 4e-11 >seq545 Length=171630274 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||| | |||||||||| | || || || |||||||||||||| || || || Sbjct 78435256 TGGTGGTACTTTGTATCTAAAGGAGTTGAGTATTTGGATACAGTGTTTTTTATTCTGAGA 78435197 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || || || || ||| || || || || |||||||| | ||| |||||||| || Sbjct 78435196 AAGAAAAACAACCAAGTTTCTTTCCTTCATGTGTATCATCACTGTACAATGTTTACCTTG 78435137 Query 58505 GGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 | ||| | || ||||| ||| ||||||| || || Sbjct 78435136 TGGTGGATTGGAATTAAGTGGGTTGCAGGGGGACA 78435102 >seq699 Length=159171411 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/138 (74%), Gaps = 11/138 (8%) Strand=Plus/Plus Query 81645 GAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTC--------TACAGT--CTT-C 81693 ||||| | |||||||| || || || ||||| | | | | | |||| ||| | Sbjct 110765562 GAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAATTACGTCCATCTTCCAGTTGCTTGC 110765621 Query 81694 TAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTT 81753 | ||||||| |||||||| ||| | ||| | ||| |||||||||| || ||||| || | Sbjct 110765622 CAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCT 110765681 Query 81754 TTATATTTTCAATCGTAT 81771 |||||||||| ||||||| Sbjct 110765682 TTATATTTTCTATCGTAT 110765699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903250788048800