Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq545 105 9e-18 seq1997 104 3e-17 seq1195 104 3e-17 seq4363 84.2 3e-11 >seq545 Length=171630274 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 1397738 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1397679 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 1397678 CCCCGACGGGGAG 1397666 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1397737 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1397678 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1397677 CCCGACGGGGAG 1397666 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1397666 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1397725 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1397726 TACTAACGAGGA 1397737 >seq1997 Length=47448759 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 15043548 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 15043489 Query 11788 CCCCGACGAGGAGGGAG 11804 |||||||| ||||| || Sbjct 15043488 CCCCGACGGGGAGGCAG 15043472 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 15043547 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 15043488 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 15043487 CCCGACGGGGAG 15043476 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 15051340 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 15051281 Query 11788 CCCCGACGAGGAGGGAG 11804 |||||||| ||||| || Sbjct 15051280 CCCCGACGGGGAGGCAG 15051264 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 15051339 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 15051280 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 15051279 CCCGACGGGGAG 15051268 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 15074957 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 15074898 Query 11788 CCCCGACGAGGAGGGAG 11804 |||||||| ||||| || Sbjct 15074897 CCCCGACGGGGAGGCAG 15074881 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 15074956 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 15074897 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 15074896 CCCGACGGGGAG 15074885 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 15077378 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 15077319 Query 11788 CCCCGACGAGGAGGGAG 11804 |||||||| ||||| || Sbjct 15077318 CCCCGACGGGGAGGCAG 15077302 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 15077377 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 15077318 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 15077317 CCCGACGGGGAG 15077306 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 15117230 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 15117289 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 15117290 CCCGACGGGGAG 15117301 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 15117229 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 15117288 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 15117289 CCCCGACGGGGAG 15117301 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 15117302 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 15117243 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 15117242 ATACTAACGAGGA 15117230 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 15043476 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15043535 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 15043536 TACTAACGAGGA 15043547 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 15051268 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15051327 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 15051328 TACTAACGAGGA 15051339 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 15074885 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15074944 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 15074945 TACTAACGAGGA 15074956 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 15077306 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15077365 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 15077366 TACTAACGAGGA 15077377 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 |||||| |||||||| | ||||| |||| ||||| | ||||||||||| |||||||||| Sbjct 15033633 CTCGTTTGTATAGTGATGAGTATCCCCGCCTGTCACGCGGGAGACCGGTCTTCGATTCCC 15033574 Query 8720 CGACGAGGA-GCAGA 8733 ||||| ||| ||||| Sbjct 15033573 CGACGGGGAGGCAGA 15033559 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 || |||||| |||||||| | ||||| |||| ||||| | ||||||||||| ||||||| Sbjct 15033636 GTTCTCGTTTGTATAGTGATGAGTATCCCCGCCTGTCACGCGGGAGACCGGTCTTCGATT 15033577 Query 11788 CCCCGACGAGGAGGGAG 11804 |||||||| ||||| || Sbjct 15033576 CCCCGACGGGGAGGCAG 15033560 >seq1195 Length=124281992 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 86065735 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 86065794 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 86065795 CCCGACGGGGAG 86065806 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 88585918 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 88585977 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 88585978 CCCGACGGGGAG 88585989 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 115907772 CCACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 115907713 Query 11785 ATTCCCCGACGAGGAGG 11801 ||||||||||| ||||| Sbjct 115907712 ATTCCCCGACGGGGAGG 115907696 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 115907768 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 115907709 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 115907708 CCCGACGGGGAG 115907697 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 115915925 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 115915866 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 115915865 CCCGACGGGGAG 115915854 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 115915926 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 115915867 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 115915866 CCCCGACGGGGAG 115915854 Score = 100 bits (110), Expect = 4e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 86065806 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 86065747 Query 139413 TACTAACGAGGATTT 139427 ||||||||||||||| Sbjct 86065746 TACTAACGAGGATTT 86065732 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 86065735 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 86065794 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 86065795 CCCGACGGGGAG 86065806 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 88585918 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 88585977 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 88585978 CCCGACGGGGAG 88585989 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 88585989 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 88585930 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 88585929 TACTAACGAGGA 88585918 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 115907697 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 115907756 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 115907757 TACTAACGAGGA 115907768 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 115915854 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 115915913 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 115915914 TACTAACGAGGA 115915925 >seq4363 Length=2391 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 8639 CGGGCTGCCGATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACG 8698 |||| |||| ||| | ||||||||||||||||| | ||||| |||| |||| | || Sbjct 96 CGGGTGGCCGTTGCTGTCGTCCTCGTTAGTATAGTGCTGAGTATCCCCGCATGTCACGCG 37 Query 8699 GGAGACCGGGGTTCGATTCCCCGA 8722 |||||| ||||||||||||||||| Sbjct 36 GGAGACTGGGGTTCGATTCCCCGA 13 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||| | ||||| |||| |||| | |||||||| ||||||||||| Sbjct 78 GTCCTCGTTAGTATAGTGCTGAGTATCCCCGCATGTCACGCGGGAGACTGGGGTTCGATT 19 Query 11788 CCCCGACGAGGAGGGAG 11804 |||||| | | ||| || Sbjct 18 CCCCGATGTGAAGGCAG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652728879245200