Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1 224 1e-53 seq1864 185 1e-41 seq1820 185 1e-41 seq545 127 2e-24 >seq1 Length=210400635 Score = 224 bits (248), Expect = 1e-53 Identities = 605/920 (66%), Gaps = 9/920 (1%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||||| |||| ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 92327246 TTATGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 92327305 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| ||| || || ||||| || | || || | |||||| Sbjct 92327306 TTATTGGCAAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAA 92327362 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || ||||||||||| || ||| || || || | || || | | || Sbjct 92327363 ATGCACACCGAGCGCACGTGCACCCCATCGCAGGGTGGGTAGGGAGCTCCCTTGGAAACG 92327422 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | | || |||||||| || ||| Sbjct 92327423 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCGTGCATGTCAGACAAATCG 92327482 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | || || || | || | ||||| | |||||||| Sbjct 92327483 TACTTATGG-CTGGCAGAGAGTGAGCCCGGGACTTCGGGAATCCTCTGGATGGTAGCCCA 92327541 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || || | || ||||||||| |||| || ||| Sbjct 92327542 GAGATACTCATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGATTTTTTC 92327601 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | |||||| || || |||||||| Sbjct 92327602 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAA 92327661 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | |||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 92327662 AAGGGGTGTTTCCAGTGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAACTTTCCATT 92327721 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 | |||| | | | || ||||||| | ||| ||| | | || || || Sbjct 92327722 AATGACCTCATACCGTTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTC 92327781 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || |||| ||| ||| ||| |||| | || || ||||| ||||| |||| Sbjct 92327782 CAGGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAAT 92327841 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725 || || || | || || ||||| || | || ||||| || | || | | |||| || Sbjct 92327842 AGGGAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCCCTCATTGCGTAGAG 92327901 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 |||| | ||||| || || ||||| || || |||||||| || || || || ||||| Sbjct 92327902 GTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTC 92327961 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 ||| | |||| ||||||||||| |||||| ||| | || |||||||| || | | Sbjct 92327962 CAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTGCAGCTAA 92328021 Query 162846 GAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903 | ||| || | ||| | || || || | ||| || | ||||||||| ||| Sbjct 92328022 ATAGGAATC--CTCGGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAG 92328079 Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963 |||||||||| || || || | ||| || ||||| || || ||||| |||||||| ||| Sbjct 92328080 ATGGCCCTCAATAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCT 92328139 Query 162964 ATGGGGAACTCAGCCTCCTC 162983 || || ||||| ||||| || Sbjct 92328140 ATTGGAAACTCTGCCTCTTC 92328159 >seq1864 Length=13681 Score = 185 bits (204), Expect = 1e-41 Identities = 234/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || | || | ||||| ||| | || | || Sbjct 9122 CATAGAGGGTGAGGCAGGGTGTTCCTGAGATCATCCCATAACCAAAGGTACTGAAGAGAC 9181 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||| ||||| || || | || || ||| || Sbjct 9182 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGA 9241 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||||| | |||||| || | ||||||||| || || || | Sbjct 9242 GTCCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATTGC 9301 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||||| ||||| | ||||| ||||| ||| || | |||||||| || || | Sbjct 9302 TGTTGCTGAAGGTGGCTACATTTTCAGGGCTTAGAGCTTTCTTTTTCTGCCATGTCACAA 9361 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | |||||| | | ||||| |||||||||||||| ||||||||||| |||| || Sbjct 9362 TCAGAACTTCGTAGGTAGTTTGTAGAGAGCATCTTAAGGAAGCAGGTGTATTCAGCTGTT 9421 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| || || || | ||| Sbjct 9422 CTCTTTCATCCTGGGTCAACAC 9443 Score = 132 bits (146), Expect = 6e-26 Identities = 164/221 (74%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 |||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| | Sbjct 4027 GTTTGTTTAAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 4083 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | ||||| ||||| || || || |||||||||||||| || ||||| || Sbjct 4084 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTAGTAACAGACGTGGTCCCATTT 4143 Query 171626 CGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| || || | ||||||||||| | || || | | ||| ||||| | || Sbjct 4144 GGGTG-AGACACAGTCTCTGTACTATTTTCAAACCCTGACCGAGGAACCTTCCAGGAGAT 4202 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || || ||||| | ||||| ||||||||||| || |||| Sbjct 4203 CACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 4243 >seq1820 Length=98464013 Score = 185 bits (204), Expect = 1e-41 Identities = 234/322 (73%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || | ||||| ||||| || | || Sbjct 83115829 CATAGAGGGTGAGGCAGGGTGTTCCTGAGATCTTCCCATAACCAAAGGTATTGAAGAGAC 83115770 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||| ||||| || || | || || ||| || Sbjct 83115769 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGA 83115710 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||||| | |||||| || | ||||||||| || || || | Sbjct 83115709 GTCCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATAGC 83115650 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||||| ||||| | ||||| ||||| ||| || | |||||||| || || | Sbjct 83115649 TGTTGCTGAAGGTGGCTACATTTTCCGGGCTTAGAGCTTTCTTTTTCTGCCATGTCACGA 83115590 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | ||||| |||||||||||||| ||||||||||| || | || Sbjct 83115589 TCAGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGTGTATTTAGCTGTT 83115530 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| || || || | ||| Sbjct 83115529 CTCTTTCATCCTGGGTCAACAC 83115508 Score = 120 bits (132), Expect = 4e-22 Identities = 161/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 |||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| | Sbjct 83118543 GTTTGTTTCAAGTCGGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 83118487 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | ||||| ||||| | || || |||||||||||||| || ||||| || Sbjct 83118486 CCCACCTGATTCTTAGGGTCTTTGAACTGGAGGATGCTAGTAACAGACGTGGTCCCATTT 83118427 Query 171626 CGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| || || || || || ||||| || || || | ||| ||||| | || Sbjct 83118426 GGGTG-AGACACAGTCTTTGTGCTGTTTTCAATCCCTGACTGAGGAACCTTCCAGTAGAT 83118368 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| | ||||| ||||||||||| || |||| Sbjct 83118367 CATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 83118327 >seq545 Length=171630274 Score = 127 bits (140), Expect = 2e-24 Identities = 399/607 (66%), Gaps = 17/607 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 95334177 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 95334118 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 95334117 CTAGCTCGCTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 95334058 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || || || | ||||| | || |||| || || Sbjct 95334057 TCTCATAGTTTTCCCTAGATGGCCCCAGAACGACAGGTACAGAGCCAGCCAGAAAAGCAT 95333998 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 95333997 TGTAGAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 95333938 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 95333937 TACAAGTAGATATGGTA--GGAATTAAATTTTTATCATTGACATATTCTCCAAATGCTTG 95333880 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || ||||| ||| || || || || | | Sbjct 95333879 CCCATAAGTATGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 95333821 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 95333820 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 95333766 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 95333765 TTCAAACACGAAGGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 95333706 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 |||||| | ||| || | || || || || | || || || | || |||| ||| Sbjct 95333705 GTCGCGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 95333648 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 | | | | || ||||| || |||||||| ||||| || || |||| ||| || | || | Sbjct 95333647 GTATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 95333588 Query 177480 GTAGGTA 177486 ||||| Sbjct 95333587 TGAGGTA 95333581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578329292168000