Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1441 91.5 1e-13 seq9075 84.2 2e-11 seq1195 84.2 2e-11 seq699 84.2 2e-11 seq1 84.2 2e-11 seq848 82.4 7e-11 >seq1441 Length=130397257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || ||||| | |||||||||||||||||| ||| ||||| || ||||| | Sbjct 67481500 TGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 67481441 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||||||| || | ||||| ||||||| ||||| Sbjct 67481440 TGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGG 67481401 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || ||||| |||||| || || || || | | Sbjct 28400989 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 28400930 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 28400929 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 28400870 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | ||||| || || || ||||| Sbjct 28400869 TTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 28400810 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 28400809 ACGAAAATCTGCAT 28400796 >seq9075 Length=2552 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || ||||| |||||| || || || || | | Sbjct 2447 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 2388 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 2387 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 2328 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | ||||| || || || ||||| Sbjct 2327 TTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 2268 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 2267 ACGAAAATCTGCAT 2254 >seq1195 Length=124281992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || ||||| |||||| || || || || | | Sbjct 101827642 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 101827701 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 101827702 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 101827761 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | ||||| || || || ||||| Sbjct 101827762 TTTTCTATCGTATCAGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 101827821 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 101827822 ACGAAAATCTGCAT 101827835 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||||||||| || ||| ||| |||||| ||||| || |||| | Sbjct 115889345 GACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 115889404 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| ||||| || || || || || || | Sbjct 115889405 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 115889464 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| ||||| | || | || || || ||||| || || Sbjct 115889465 TTCTCGATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 115889524 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 115889525 ACGAAGATCTGCATG 115889539 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| | ||| ||| |||||| ||||| || |||| | Sbjct 115889573 GACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 115889632 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || || || | Sbjct 115889633 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACA 115889692 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | || | || ||||||||||| || || Sbjct 115889693 TTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTC 115889752 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 115889753 ACGAAGATCTGCATG 115889767 >seq699 Length=159171411 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || ||||| |||||| || || || || | | Sbjct 642803 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 642862 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 642863 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 642922 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | ||||| || || || ||||| Sbjct 642923 TTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 642982 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 642983 ACGAAAATCTGCAT 642996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| || ||||| |||||| || || || || | | Sbjct 94894864 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 94894805 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 94894804 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 94894745 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | ||||| || || || ||||| Sbjct 94894744 TTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 94894685 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 94894684 ACGAAAATCTGCAT 94894671 >seq1 Length=210400635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| || ||||| ||| || || || || || | | Sbjct 202614664 GACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGTTGCTTGCCAGCA 202614605 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| || || || | Sbjct 202614604 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 202614545 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| ||| || || |||| || | || || || || || ||||| Sbjct 202614544 TTTTCTATCGTATCCAACGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 202614485 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 202614484 ATGAAAATCTGCAT 202614471 >seq848 Length=158406734 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || || ||||| || | ||| || Sbjct 109165398 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAGAGGGTGCG 109165339 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| || | | |||| | | ||| || || ||||| |||||||| Sbjct 109165338 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 109165279 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | ||||| || || | || Sbjct 109165278 CTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAAGGT 109165219 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || ||||||||||| || || | ||| ||||||||| Sbjct 109165218 GATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCATG 109165179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476526571723800