Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq548 107 6e-20 seq2190 102 3e-18 seq1441 98.7 3e-17 seq1195 98.7 3e-17 seq545 98.7 3e-17 seq1 98.7 3e-17 >seq548 Length=9411 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1733 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 1674 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1673 TCCCGGGTTTCGGC 1660 >seq2190 Length=49145316 Score = 102 bits (112), Expect = 3e-18 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 48869195 GCTGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 48869136 Query 2829 CCGGGCTTC 2837 ||| | ||| Sbjct 48869135 CCGAGTTTC 48869127 Score = 86.0 bits (94), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||| ||||||||||| ||||| || ||| Sbjct 1078481 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGATGATCTAAAGGT-CCTGGATCGACC 1078423 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1078422 CCGGGTTTCGGC 1078411 Score = 80.6 bits (88), Expect = 8e-12 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 2784 TTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 |||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1078280 TTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGACCCCGG 1078232 >seq1441 Length=130397257 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 115078183 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 115078124 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 115078123 CCGGGTTTCGGC 115078112 >seq1195 Length=124281992 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 115908308 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 115908249 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 115908248 CCGGGTTTCGGC 115908237 >seq545 Length=171630274 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 157917 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 157976 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 157977 CCGGGTTTCGGC 157988 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 301711 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 301770 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 301771 CCGGGTTTCGGC 301782 Score = 96.9 bits (106), Expect = 1e-16 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 77375790 GCTGAAATAGCTCAGTTGAAAGAGCATTAGACTGAAGATCTAAAGGTCCTTGGTTCAATC 77375731 Query 2829 CCGGGCTTCAG 2839 || || ||||| Sbjct 77375730 CCAGGTTTCAG 77375720 >seq1 Length=210400635 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 9668253 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 9668194 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 9668193 CCGGGTTTCGGC 9668182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847137492225