Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq9075 86.0 6e-12 seq1441 86.0 6e-12 seq1195 86.0 6e-12 seq699 86.0 6e-12 seq1 86.0 6e-12 seq2320 82.4 7e-11 seq1997 82.4 7e-11 >seq9075 Length=2552 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | || |||||| | ||||| |||| || ||| | Sbjct 2250 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 2309 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 2310 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 2369 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 2370 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 2429 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| ||||| || || || || ||||| | ||||| ||| Sbjct 2430 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 2469 >seq1441 Length=130397257 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | || |||||| | ||||| |||| || ||| | Sbjct 28400792 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 28400851 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 28400852 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 28400911 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 28400912 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 28400971 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| ||||| || || || || ||||| | ||||| ||| Sbjct 28400972 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 28401011 >seq1195 Length=124281992 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | || |||||| | ||||| |||| || ||| | Sbjct 101827839 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 101827780 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 101827779 CTCTGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 101827720 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 101827719 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 101827660 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| ||||| || || || || ||||| | ||||| ||| Sbjct 101827659 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 101827620 >seq699 Length=159171411 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | || |||||| | ||||| |||| || ||| | Sbjct 643000 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 642941 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 642940 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 642881 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 642880 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 642821 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| ||||| || || || || ||||| | ||||| ||| Sbjct 642820 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 642781 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | || |||||| | ||||| |||| || ||| | Sbjct 94894667 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 94894726 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 94894727 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 94894786 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 94894787 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 94894846 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| ||||| || || || || ||||| | ||||| ||| Sbjct 94894847 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 94894886 >seq1 Length=210400635 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | || |||||| | ||||| |||| || ||| | Sbjct 34242735 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 34242794 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 34242795 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 34242854 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 34242855 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTA 34242910 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| ||||| || || || || ||||| | ||||| ||| Sbjct 34242911 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 34242950 >seq2320 Length=142054208 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | || |||||| | ||||| |||| | ||| | Sbjct 106998303 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGCTGAACC 106998362 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 106998363 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 106998422 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 106998423 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTA 106998482 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| ||||| || || || || ||||| | ||||| ||| Sbjct 106998483 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 106998522 >seq1997 Length=47448759 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || ||||| | || |||||| | ||||| |||| || ||| | Sbjct 31032552 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 31032611 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| | || | ||||| || || ||||| || || || || || || Sbjct 31032612 CTCGGATACGAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 31032671 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 31032672 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 31032731 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| ||||| || || || || ||||| | ||||| ||| Sbjct 31032732 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 31032771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445015367925600