Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1820 230 3e-55 seq1864 224 1e-53 seq1644 158 1e-33 seq2049 154 2e-32 >seq1820 Length=98464013 Score = 230 bits (254), Expect = 3e-55 Identities = 247/322 (77%), Gaps = 6/322 (2%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||| ||||||||||||| || | | ||| || || || || ||| | | |||||| ||| Sbjct 83115508 GTGTTGACCCAGGATGAAAGAGAACAGCTAAATACACCTGCTTCCTTAAGATGCTCTCTG 83115567 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||| | | || || ||||| || || |||||||||| || | | | || | | Sbjct 83115568 CAAACTACCTACGAAGTCCTGATCGTGACATGGCAGAAAAAGAAAGCT-CTAAGCCCG-G 83115625 Query 171192 AACATGATA---ACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || ||| || || || ||||| | | ||||||||||||||||| || ||||||||| Sbjct 83115626 AAAATG-TAGCCACCTTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTATAAGGAC 83115684 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||| | ||||| |||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 83115685 AAGTTGAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACC 83115744 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| | |||||| ||||| Sbjct 83115745 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCA 83115804 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || ||||||||||||||| Sbjct 83115805 GGAACACCCTGCCTCACCCTCT 83115826 Score = 149 bits (164), Expect = 7e-31 Identities = 199/277 (72%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || | || || || | ||| | ||| |||||||| || ||||| || Sbjct 83118281 GTACAGCCCACAGTATCCCTTCACTACAGATTCTCTGAAGACCACCTAAATATCACTTGC 83118340 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||||||||| | || ||| | |||||| || | ||||| |||||| Sbjct 83118341 TCTGCCACTGCCCGCCCAGCCCCCATGATCTACTGGAAGGTTCCTCAGTCAGGGATTGAA 83118400 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||| | || | | || || | ||||| || || ||||| || || | ||||| Sbjct 83118401 AACAGCACAAAGACTGTGTCTCACCCAAATGGGACCACGTCTGTTACTAGCATCCTCCAG 83118460 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||| |||| |||| |||| |||||||| |||||||| ||| ||||||||| Sbjct 83118461 TTCAAAGACCCTAAGAATCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGG 83118520 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || |||| | |||| | | ||| |||| Sbjct 83118521 ACTGTGACCGACTTGAAACAAACCTTCAACAAAGGTA 83118557 Score = 113 bits (124), Expect = 5e-20 Identities = 208/304 (68%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || || | ||||||| ||||| | | ||||||| Sbjct 21956022 GTACTCCCTGGTGTTCATTGTGGGCCTCTTGGGCAATGTGTTGGTGGTGGTGATCCTCAT 21956081 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || |||||||| |||| |||| ||||||||||| || || Sbjct 21956082 AAAATACAGGAGGCTCCGAATTATGACCAATATCTACCTGCTCAACCTGGCCATTTCCGA 21956141 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | |||||||| || || ||||| |||| || | ||| ||| Sbjct 21956142 CCTGCTCTTCCTCTTCACCCTTCCATTCTGGATCCACT--ATATCATGTGGA----GTGA 21956195 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | ||| ||||||||| || ||| ||| | | |||| Sbjct 21956196 CTGGGTTTTTGGCCATGGTATGTGTAAGGCCATCTCGGGGTTTTATTTCACAGGCTTGTA 21956255 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || |||||||||||||| | |||||||| || || |||| |||| Sbjct 21956256 CAGCGAGATCTTTTTCATCATCCTGTTGACAATCGACAGGTACCTGGCCATTGTCCACGC 21956315 Query 8910 GGTG 8913 ||| Sbjct 21956316 CGTG 21956319 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| || ||||||| ||||||| || | ||||| | Sbjct 21894793 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGCAACATCCTGGTGGTCGTGGTCCTTGT 21894734 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | ||||||| ||||| ||| || ||||||||| || ||| Sbjct 21894733 GCAATACAAGAGGCTCAAAAATATGACCAGCATCTACCTCTTGAACCTGGCCATTTCTGA 21894674 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 |||||| | | ||||| || ||||| ||||| Sbjct 21894673 CCTGCTCTTCCTGTTCACGCTGCCCTTCTGGAT 21894641 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 9205 CTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACGTCCTGCTC 9264 |||||||| |||| ||||| | | ||| | || |||| ||||||||| | ||| Sbjct 21956620 CTCATTTTAGTCATCATGGTGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGCTCTC 21956679 Query 9265 ATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGGCGCAGGG-- 9322 || | | |||| |||| | | ||||| |||||| | || | ||| || Sbjct 21956680 CTTCTCTATACCTTTCAAGTCAACTTGTTTGGATATGACTGTAA---GCAGAGCAAGGAT 21956736 Query 9323 -TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCC 9381 ||||| ||||||| ||||| | || ||||||||| | ||||||||||||| ||||| Sbjct 21956737 CTGGACCTGGCCCTACTGGTGACGCAGGTGATCGCCTACTCCCACTGCTGCGTGAACCCG 21956796 Query 9382 GTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 || |||||||| || || || || | ||||| Sbjct 21956797 GTGATCTACGCCTTCGTTGGAGAGAGGTTCC 21956827 >seq1864 Length=13681 Score = 224 bits (248), Expect = 1e-53 Identities = 241/319 (76%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||| ||||||||||||| || | | |||||| || || || ||| | | |||||| || Sbjct 9443 GTGTTGACCCAGGATGAAAGAGAACAGCTGAATACACCTGCTTCCTTAAGATGCTCTCTA 9384 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || ||| | | || || |||||||| || |||||||||| || | | || || Sbjct 9383 CAAACTACCTACGAAGTTCTGATTGTGACATGGCAGAAAAAGAAAGCTCTAAGCCCTGAA 9324 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 || | || || ||||| | | ||||||||||||||||| || |||||||||||| Sbjct 9323 AATGTAGCCACCTTCAGCAACAGCAATGGGGTGGTGGTCCAGCCTGCCTATAAGGACAAG 9264 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | ||||| |||||||| ||||||||||||||||||||||| || |||||||||||| | Sbjct 9263 TTGAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACCCTG 9204 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| || ||||| |||| || ||||| | |||||||| | ||||| ||||| || Sbjct 9203 GAGGATGAAGGGTGTTACATGTGTCTCTTCAGTACCTTTGGTTATGGGATGATCTCAGGA 9144 Query 171372 GTGGCCTGCCTCACCCTCT 171390 ||||||||||||||| Sbjct 9143 ACACCCTGCCTCACCCTCT 9125 >seq1644 Length=117903854 Score = 158 bits (174), Expect = 1e-33 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 57521651 CTTCAGGCCCGTGATGTGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAA 57521710 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct 57521711 AGGCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTT 57521770 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||||||||| Sbjct 57521771 CACCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 57521815 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| || || | |||| Sbjct 57526175 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATCCCCTTCTTCTCTGGCG 57526234 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 || || ||| | | ||||| || |||| || | ||| |||||||| ||||||| Sbjct 57526235 GAAAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 57526294 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || ||||| |||| | ||||| ||| Sbjct 57526295 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCC 57526327 >seq2049 Length=49578535 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 28850654 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 28850595 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || | ||| ||||| |||||||| || |||| Sbjct 28850594 TGCCCCAAGCTGAGAACCA------------TGACCCAGACATCAAGGAGCACGTGAACT 28850547 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||||||||||||||| |||||| | || |||||||||| || ||| Sbjct 28850546 CTCTGGGGGAAAAGCTGAAGACCTTCAGGCTGAGGCTGCGACGCTGT 28850500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||| | |||||||| |||||||||||||| || || || |||||| Sbjct 28847992 AGCTCCAAGAGAAAGGTATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 28847933 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 28847932 TAGAAGCCTACATGACAA 28847915 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 178081 AGTCTGAAAACAATTGCACTCACTTTCCAACCAGTTTGCCTCACATGCTCCATGAGCTCC 178140 ||||||| |||| ||||| ||||||||| ||| ||||||||||||| | ||||||| Sbjct 28851968 AGTCTGAGAACAGCTGCACCCACTTTCCAGGCAGCCTGCCTCACATGCTTCGAGAGCTCC 28851909 Query 178141 GGGCCGCTTTTAGCAGAGTAAAGACttttttt 178172 | | || || |||||||| |||||||| ||| Sbjct 28851908 GAGTTGCCTTCAGCAGAGTGAAGACTTTCTTT 28851877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583384394412000