Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq699 84.2 2e-11 seq1441 82.4 6e-11 >seq699 Length=159171411 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| || ||||||||||| | |||| | Sbjct 77802912 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA 77802971 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | || || ||| Sbjct 77802972 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCCTTA 77803031 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | ||||| | | || ||||| || || || Sbjct 77803032 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACTTCCAGGGTGATG 77803091 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||||| ||||| || ||||| ||||| |||||| Sbjct 77803092 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 77803127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| || ||||||||||| | |||| | Sbjct 77803140 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA 77803199 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | || |||||| Sbjct 77803200 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 77803259 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | ||||| | | || || || || || || Sbjct 77803260 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATG 77803319 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||| ||||| ||||| Sbjct 77803320 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77803354 >seq1441 Length=130397257 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27016 TATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075 || |||| || |||| |||| |||| || | || || ||||| || || ||||||| Sbjct 24229249 TAATGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGT 24229308 Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | | | |||| | || || |||||||| | ||| || |||||||| || || | Sbjct 24229309 C--TGAGAGTGCGGCCATCCTCCAGCTGTTTGCGGGCAAGTATCAGACGCTGCTGGTCAG 24229366 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | ||| || || || | || ||| ||| | | || | ||||| ||| | Sbjct 24229367 GTGGGATACCTTCCTTGTCTTCAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCT 24229426 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || || | ||||||| | || || ||||||||||| ||||| Sbjct 24229427 CGACCTCAAGGGTGATGGTTTTGCCCCTGAGGGTCTTCACAAAGATCTGCAT 24229478 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 27016 TATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT 27075 || |||| || |||| |||| |||| || | || || ||||| || || ||||||| Sbjct 119049531 TAATGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGT 119049472 Query 27076 CGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | | |||| | || || |||||||| |||| | || |||||||| || || | Sbjct 119049471 CTGAGAGCGTGCGGCCATCCTCTAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAG 119049412 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | |||||| || || || ||| ||| | | || ||||| ||| | Sbjct 119049411 GTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCT 119049352 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 |||| || | || || | |||||||| || || ||||||||||| ||||| |||| Sbjct 119049351 CAACCTCAATGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCTCTGC 119049294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424860833895960