Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1947 100 3e-16 seq1721 95.1 1e-14 seq798 91.5 2e-13 seq699 91.5 2e-13 seq435 91.5 2e-13 seq1004 82.4 8e-11 >seq1947 Length=74750902 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || ||||| Sbjct 56383255 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAATTGA 56383314 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 56383315 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 56383374 Query 117425 ATCGT 117429 || || Sbjct 56383375 ATAGT 56383379 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| |||||||| || Sbjct 56383255 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAATTGA 56383314 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||| ||||| || |||||||||||||||||| Sbjct 56383315 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 56383374 Query 152149 ATCGT 152153 || || Sbjct 56383375 ATAGT 56383379 >seq1721 Length=108792865 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 98462391 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 98462450 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || |||| || |||||| |||||||||||||| || |||||||| Sbjct 98462451 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 98462510 Query 74892 ACAAGGCGTT 74901 || | ||||| Sbjct 98462511 ACGACGCGTT 98462520 >seq798 Length=25304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||| Sbjct 1383 CCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 1324 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| || |||||| ||||||| |||||| || |||||| Sbjct 1323 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAG 1264 Query 74889 GCGACAAGGCGTT 74901 || || | ||||| Sbjct 1263 GCTACGACGCGTT 1251 >seq699 Length=159171411 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| || | || |||| ||||||||||||| || | ||||| || || Sbjct 112212142 GTGAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 112212201 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||| |||||||| || ||| |||||||| || |||||||| |||| | Sbjct 112212202 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 112212261 Query 117425 ATCGT 117429 || || Sbjct 112212262 ATGGT 112212266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| |||| || |||||||| Sbjct 112212142 GTGAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 112212201 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 112212202 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 112212261 Query 152149 ATCGT 152153 || || Sbjct 112212262 ATGGT 112212266 >seq435 Length=190850796 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||| Sbjct 47340344 CCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 47340285 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| || |||||| |||||||||||||| || |||||| Sbjct 47340284 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAG 47340225 Query 74889 GCGAC 74893 || || Sbjct 47340224 GCTAC 47340220 >seq1004 Length=155834243 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || |||||||| || | |||||| ||||| |||| |||||| ||||| || ||| Sbjct 136911312 CCCTCCTCTCTGCTAATAAGTTCATTAGAAAATATGAGGCTAGGCATCAGTCCTCGTTTC 136911253 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| || |||||| |||||||||||||| || |||||| Sbjct 136911252 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAG 136911193 Query 74889 GCGACAAGGCGTT 74901 || || | ||||| Sbjct 136911192 GCTACGACGCGTT 136911180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547118834959000