Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1644 134 1e-26 seq435 123 2e-23 seq1 114 1e-20 seq274 93.3 3e-14 seq2147 86.0 5e-12 >seq1644 Length=117903854 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 57521655 AGGCCCGTGATGTGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 57521714 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||| |||||||| ||||| || || ||||| |||| | Sbjct 57521715 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 57521774 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 57521775 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 57521818 Score = 120 bits (132), Expect = 2e-22 Identities = 186/261 (71%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 110378 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTC 110437 || ||||||| || || || || || ||||||||||| ||||| || || || || Sbjct 40215876 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 40215817 Query 110438 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 110497 | | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 40215816 TTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 40215757 Query 110498 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 110556 |||| || || |||||||| || | |||| | ||| | || | | || || || Sbjct 40215756 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 40215698 Query 110557 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 110615 | || || |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 40215697 CTGAG------CGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 40215645 Query 110616 CGCGGCCACGATACCGTTCAG 110636 | | || ||||| | ||| || Sbjct 40215644 CACAGCGACGATGCAGTTTAG 40215624 Score = 105 bits (116), Expect = 5e-18 Identities = 128/173 (74%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| || Sbjct 57526159 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATC 57526218 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| || ||| | |||| |||||||| ||| || ||||| || Sbjct 57526219 CCCTTCTTCTCTGGCGGAAAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 57526278 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 |||||| || || ||||| ||| |||||||| | |||||||| || |||| Sbjct 57526279 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 57526330 >seq435 Length=190850796 Score = 123 bits (136), Expect = 2e-23 Identities = 187/261 (72%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 110378 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTC 110437 || ||||||| || || || || || ||||||||||| ||||| || || || || Sbjct 174408235 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 174408294 Query 110438 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 110497 | | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 174408295 TTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 174408354 Query 110498 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 110556 |||| || || |||||||| || | |||| | ||| | || | | || || || Sbjct 174408355 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 174408413 Query 110557 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 110615 | || || |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 174408414 CTGAG------CGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 174408466 Query 110616 CGCGGCCACGATACCGTTCAG 110636 | | || ||||||| ||| || Sbjct 174408467 CACAGCGACGATACAGTTTAG 174408487 >seq1 Length=210400635 Score = 114 bits (126), Expect = 1e-20 Identities = 185/261 (71%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 110378 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTC 110437 || ||||||| || || || || || ||||||||||| ||||| || || || || Sbjct 66233987 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 66234046 Query 110438 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 110497 | | ||| | |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 66234047 TTAAAGGGCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 66234106 Query 110498 TCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 110556 |||| || || |||||||| || | |||| | ||| | || | | || || || Sbjct 66234107 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 66234165 Query 110557 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 110615 | || || |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 66234166 CTGAG------CGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 66234218 Query 110616 CGCGGCCACGATACCGTTCAG 110636 | | || ||||| | ||| || Sbjct 66234219 CACAGCGACGATGCAGTTTAG 66234239 >seq274 Length=204313951 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || ||||||||||| ||||| || || || || | | ||||| |||||| || || Sbjct 127557828 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 127557769 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 110504 ||||||||||| ||||| |||||||| ||||||| ||||| || Sbjct 127557768 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTT 127557725 >seq2147 Length=50472720 Score = 86.0 bits (94), Expect = 5e-12 Identities = 174/256 (68%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || | || || || ||||| || | || || || || | Sbjct 4191962 ATGAGCTCCTTGTGGAGGTTCCTGGAGTTCTCTACTGAGAACGAAATTAATTCTATCCTT 4191903 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 4191902 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 4191843 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| | || || || | |||| | ||| | || | | || || || | Sbjct 4191842 CTGTTTACCTTCTATCGAGGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTTC 4191784 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 110617 ||| || |||| ||||| || || || || ||||| ||||||| | | || Sbjct 4191783 TGAGT------GGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTTTGGGACA 4191730 Query 110618 CGGCCACGATACCGTT 110633 | || ||||| | ||| Sbjct 4191729 CTGCGACGATGCAGTT 4191714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406240058146860