Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1820 118 7e-22 seq435 109 3e-19 seq1195 105 4e-18 seq1441 104 1e-17 seq545 100 2e-16 seq1556 96.9 2e-15 seq2049 95.1 8e-15 seq1334 86.0 4e-12 seq9075 84.2 1e-11 >seq1820 Length=98464013 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || | || ||||| || || ||| ||| || || |||||||| ||||| Sbjct 87532223 GCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCTGA 87532282 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | || || || ||||| ||||||||||| | |||||||||||| || || Sbjct 87532283 GAGTGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGACGCTGTTGGTCAGGTGG 87532342 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||| ||||||| ||| ||| | ||| || | | | ||||| | | ||| | Sbjct 87532343 GATCCCCTTCTTGTCT-TGAATTTTGGCTTTGACATTCTCAGTGGTGTCATTGGGCTCGA 87532401 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||||||| |||||||| Sbjct 87532402 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 87532450 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || | || ||||| || || ||| ||| || || ||||| || ||||| Sbjct 25100026 GCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 25100085 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || | | | || || || ||||| ||||| ||||| | | |||| ||||| || || Sbjct 25100086 GAGCATGCAGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGATGCTGCTGGTCAGGTGG 25100145 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| | | || | Sbjct 25100146 GAAGCCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCATTGGGCTTGA 25100204 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || | | | || |||||||| |||||||| Sbjct 25100205 CCTCAAGGGTGATGGTCTTGCTAATGAGGGTCTTCACAAAGATCTGCAT 25100253 >seq435 Length=190850796 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 151101929 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 151101988 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| ||||||||||| | | |||| ||||| || || Sbjct 151101989 GAGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGG 151102048 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| | ||||| Sbjct 151102049 GATACCCTCCTTGTCT-TGAATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCCA 151102107 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || | || | || |||||||| |||||||| Sbjct 151102108 CCTCAAGGGTGATGGTCTTGGCCGTGAGGGTCTTCACAAAGATCTGCAT 151102156 >seq1195 Length=124281992 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | || | || |||||| ||| || |||||||| || || || Sbjct 115889311 GCCACCTCTGAGACGGAGGACGAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGA 115889370 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 115889371 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115889430 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| | ||| | Sbjct 115889431 GATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGA 115889489 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || ||||| | || ||||| || ||||||||| Sbjct 115889490 CTTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 115889539 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||| | || | ||| || || ||| || || ||||| || || || Sbjct 115889083 GCCACCTCGGAGACGGAGAACGAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 115889142 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 115889143 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115889202 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||| || | || || | || ||||| | ||| | Sbjct 115889203 GATACCCTCCTTGTCTTGGATC-TTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGA 115889261 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || ||||| || | || ||||| || ||||||||| Sbjct 115889262 CCTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCATG 115889311 >seq1441 Length=130397257 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 119049527 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 119049468 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| |||||||||| | |||||| ||||| || || Sbjct 119049467 GAGCGTGCGGCCATCCTCTAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGTGG 119049408 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | | | ||||| | ||| | Sbjct 119049407 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAA 119049349 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||||||| |||||||| Sbjct 119049348 CCTCAATGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 119049300 >seq545 Length=171630274 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || |||| Sbjct 18158623 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGCCTGA 18158682 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| ||||||||||| | | |||| ||||| || || Sbjct 18158683 GAGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGG 18158742 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | | | ||||| | ||| | Sbjct 18158743 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGA 18158801 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||||||| |||||||| Sbjct 18158802 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 18158850 >seq1556 Length=121768101 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 34483 CCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGT 34542 |||| || | || ||||| || || ||| ||| || || ||||| || ||||| || Sbjct 87863146 CCTCGCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGC 87863205 Query 34543 GTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACT 34602 || || | ||||| || ||||| ||||||||||| | | |||| ||||| || || | Sbjct 87863206 GTACGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATA 87863265 Query 34603 CCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTC 34661 |||||||||||| ||| ||| | ||| || | ||| || || | ||| || || Sbjct 87863266 CCCTCCTTGTCT-TGAATTTTGGGTTTGACATTCTCAATGGTATCACTGGGCTCGACCTC 87863324 Query 34662 CACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||| || || || || | | || |||||||| |||||||| Sbjct 87863325 AAGGGTGATGGTCTTGCCCCTGAGGGTCTTCACAAAGATCTGCAT 87863369 >seq2049 Length=49578535 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| |||| || || ||| ||| || || ||||| || | ||| Sbjct 13381125 GCCACCTCGCAGGCGCAGCACCGGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTTTGA 13381184 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| ||||||||||| | || ||| ||||| || || Sbjct 13381185 GAGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGACCCTGCTGGTCAGGTGG 13381244 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| | ||| | Sbjct 13381245 GATCCCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCGA 13381303 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | | | || || || || || | || |||||||| |||||||| Sbjct 13381304 CCTCAAGGCTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 13381352 >seq1334 Length=132174527 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || | || ||||| || |||||| ||| || || ||||| || ||||| Sbjct 4335447 GCCACCTCTCAGGCACAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGA 4335388 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || | | | || || | ||||| |||||||| || | || ||| ||||| || || Sbjct 4335387 GAGACTGTGGCCATCCTCCATCTGTTTGCCGGCAAAGATCAGACACTGCTGGTCAGGTGG 4335328 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | | | ||||| | ||| | Sbjct 4335327 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCACTGGTGTCACTGGACTCGA 4335269 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || | || || | || |||||||| |||||||| Sbjct 4335268 CCTCAAGGGTGATGGTCCTGCCCGTGAGTGTCTTCACAAAGATCTGCAT 4335220 >seq9075 Length=2552 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | |||||| | ||| ||||| |||||| |||||||| || || || Sbjct 2480 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGAC 2421 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| ||||| || || ||||| || | | || || || || || Sbjct 2420 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 2361 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| ||||| || |||||| |||| | ||||| || | || || Sbjct 2360 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACC 2301 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || ||||| || || | |||||||| ||||||||||| ||| Sbjct 2300 TCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 2250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314675112929765