Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1644 174 1e-38 >seq1644 Length=117903854 Score = 174 bits (192), Expect = 1e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || |||||||| ||||| |||| ||| Sbjct 57521667 TGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 57521726 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| || ||| | || ||||| ||| Sbjct 57521727 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACATAGAACTGG 57521786 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || |||||||||||||| ||||| Sbjct 57521787 CAGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATC 57521827 Score = 174 bits (192), Expect = 1e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| |||||||||||||| || || ||||| |||||||||| ||||| || | ||| Sbjct 57521827 GATCTTCCTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 57521768 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || |||||||||||||||| |||| ||||| ||| Sbjct 57521767 GGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTC 57521708 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| |||||||| ||||||||||| || Sbjct 57521707 AACATCGCCAGCTACGCCCTGCTCACATACATGATCGCGCA 57521667 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || |||||||| || || || || Sbjct 57526169 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATCCCCTTCTTCT 57526228 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | || ||| | |||||||||||||| || || | || |||||||| ||| Sbjct 57526229 CTGGCGGAAAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 57526288 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 57526289 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 57526322 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 57526322 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 57526263 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||||||||||||| | ||| || | | | || || || || |||||||| || | Sbjct 57526262 GAGACTTTCTGGATAGCTTGGGATTTTCCGCCAGAGAAGAAGGGGATTTGGGCCCAGTTT 57526203 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 57526202 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 57526169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448182805407600