Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2147 208 6e-49 seq435 206 2e-48 seq1644 192 5e-44 seq1 192 5e-44 seq1864 158 1e-33 seq1820 158 1e-33 seq545 86.0 5e-12 >seq2147 Length=50472720 Score = 208 bits (230), Expect = 6e-49 Identities = 374/544 (69%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 2143 AACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGG 2202 ||||| || | || || || |||| ||||| || || || ||||| | ||||| ||| Sbjct 4191714 AACTGCATCGTCGCAGTGTCCCAAAACATGGGTATCGGCAAGAAGGGGGACCTGCCCTGG 4191773 Query 2203 CCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGAC 2259 || || || | ||||||||| | |||| || | |||||| | | || || | || Sbjct 4191774 CCGCCACTCAGAAATGAATTCAGGTATTTCCAGAGAATGACCACAACCTCCTCGATAGAA 4191833 Query 2260 TTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGC 2319 ||||||||| | || |||||||| || ||||| ||||| || |||| | | ||| Sbjct 4191834 GGTAAACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGAAGA 4191891 Query 2320 A--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCAC 2377 | | ||||| || | ||||| ||| | |||||||||||| | || | || || |||| Sbjct 4191892 ATCGACCTTTAAAGGATAGAATTAATTTCGTTCTCAGTAGAGAACTCCAGGAACCTCCAC 4191951 Query 2378 GTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAG 2437 || ||||| ||| |||| | |||| | ||| | || | | ||| | ||| | Sbjct 4191952 AAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCATTAAACCTTACTGAACAACCGG 4192011 Query 2438 AATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGA 2497 ||||| | | | || |||| |||||||||| ||||||| || ||||| ||| |||| Sbjct 4192012 AATTAGCAAATAAAGTAGATATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGGAAG 4192071 Query 2498 GCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAAT 2557 ||| | | | || | | | || ||| | ||||| || |||| | |||||| Sbjct 4192072 CCATGAATCGCCCAGGCCACCTTAAACTATTTGTGACAAGAATCATGCAGGACTTTGAAA 4192131 Query 2558 GTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAG 2617 |||| |||| || ||||||||| || | ||||| |||| || | |||| |||| Sbjct 4192132 GTGACACATTTTTTCCAGAAATTGATTTGGAGAAATAGAAACTTCTGCCAGAATACCCAG 4192191 Query 2618 GTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaa 2677 | |||| ||||| || || || || || || |||| ||||||||||| ||||||| | Sbjct 4192192 GCGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATATGAGA 4192251 Query 2678 aaaa 2681 | || Sbjct 4192252 AGAA 4192255 >seq435 Length=190850796 Score = 206 bits (228), Expect = 2e-48 Identities = 378/548 (69%), Gaps = 12/548 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 ||||||||||| | ||||| || | || |||||||| || || || || ||||||| Sbjct 174408487 CTAAACTGTATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGTGAACTGCCC 174408428 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCCACT 2256 ||||| || || | |||||||| | |||| || | |||| || | ||||| Sbjct 174408427 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACGACCTCTTCAGTA 174408368 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 174408367 GAAGATAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 174408310 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| || | || || || || | Sbjct 174408309 AGAATCGACCTTTAAAGGATAGAATTAATGTAGTTCTCAGCAGGGAACTCAAGGAACCTC 174408250 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || |||| || |||| | |||| | ||| | || | || ||| | || Sbjct 174408249 CACAAGGAGCTC---TTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAAC 174408193 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||||||||||| || ||||| ||| ||| Sbjct 174408192 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAATTGGTGGCAGTTCTGTTTATAAGG 174408133 Query 2495 AGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | | || | | | |||||| | |||||||| |||| | ||| Sbjct 174408132 A-AGCCATGGATCACCCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACTTT 174408074 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || ||||||||| || | ||||| |||| || | ||| Sbjct 174408073 GAAAGTGACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCACAATAC 174408014 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||||||||| | || || || || || |||| ||||||||||| ||||| Sbjct 174408013 CCAGGTGTTCCCTCTGATGACCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAT 174407954 Query 2674 Gaaaaaaa 2681 || || || Sbjct 174407953 GAGAAGAA 174407946 >seq1644 Length=117903854 Score = 192 bits (212), Expect = 5e-44 Identities = 376/548 (69%), Gaps = 12/548 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| || || || || ||||||| Sbjct 40215624 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGTGAACTGCCC 40215683 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | |||||||| | |||| || | |||||| | | || || | Sbjct 40215684 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACGACCTCTTCAGTA 40215743 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 40215744 GAAGATAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 40215801 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| || | || || || || | Sbjct 40215802 AGAATCGACCTTTAAAGGATAGAATTAATGTAGTTCTCAGCAGGGAACTCAAGGAACCTC 40215861 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || |||| || |||| | |||| | ||| | || | || ||| | || Sbjct 40215862 CACAAGGAGCTC---TTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAAC 40215918 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||||||||||| || ||||| ||| ||| Sbjct 40215919 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAATTGGTGGCAGTTCTGTTTATAAGG 40215978 Query 2495 AGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | | || | | | || ||| | |||||||| |||| | ||| Sbjct 40215979 A-AGCCATGGATCACCCAGGCCATCTTAAACTCTTTGTGACAAGGATCATGCAGGACTTT 40216037 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || ||||||||| || | ||||| |||| || | ||| Sbjct 40216038 GAAAGTGACACGTTTTTTCCAGAAATTGATTTAGAGAAATATAAACTTCTGCCACAATAC 40216097 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||||||||| | || || || || || |||| ||||||||||| |||| Sbjct 40216098 CCAGGTGTTCCCTCTGATGACCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAG 40216157 Query 2674 Gaaaaaaa 2681 || || || Sbjct 40216158 GAGAAGAA 40216165 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 101260187 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 101260128 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 101260127 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 101260068 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 101260067 ATCGCCCTGTGGATGACCGA 101260048 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || ||||||||||| | || ||||||||| | || ||||| Sbjct 57521655 AGGCCCGTGATGTGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 57521714 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| ||||| | Sbjct 57521715 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 57521774 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 57521775 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 57521815 >seq1 Length=210400635 Score = 192 bits (212), Expect = 5e-44 Identities = 376/548 (69%), Gaps = 12/548 (2%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| || || || || ||||||| Sbjct 66234239 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACGGTGAACTGCCC 66234180 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | |||||||| | |||| || | |||||| | | || || | Sbjct 66234179 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACGACCTCTTCAGTA 66234120 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 66234119 GAAGATAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 66234062 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| || | || || || || | Sbjct 66234061 AGAATCGCCCTTTAAAGGATAGAATTAATGTAGTTCTCAGCAGGGAACTCAAGGAACCTC 66234002 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || |||| || |||| | |||| | ||| | || | || ||| | || Sbjct 66234001 CACAAGGAGCTC---TTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAAC 66233945 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||||||||||| || ||||| ||| ||| Sbjct 66233944 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAATTGGTGGCAGTTCTGTTTATAAGG 66233885 Query 2495 AGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | | || | | | ||||| | ||||||| |||| | ||| Sbjct 66233884 A-AGCCATGGATCACCCAGGCCATCTTAAACTGTTCGTGGCAAGGATCATGCAGGACTTT 66233826 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || ||||||||| || | ||||| |||| || | ||| Sbjct 66233825 GAAAGTGACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCACAATAC 66233766 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||||||||| | || || || || || |||| ||||||||||| ||||| Sbjct 66233765 CCAGGTGTTCCCTCTGATGACCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAT 66233706 Query 2674 Gaaaaaaa 2681 || || || Sbjct 66233705 GAGAAGAA 66233698 >seq1864 Length=13681 Score = 158 bits (174), Expect = 1e-33 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 |||||| | ||||| |||||||| ||| ||||| |||||| ||||| | ||||| Sbjct 9371 GAAGTTCTGATTGTGACATGGCAGAAAAAGAAAGCTCTAAGCCCTGAAAATGTAGCCACC 9312 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || | | ||||| || || ||||| || || || || || ||||||| || Sbjct 9311 TTCAGCAACAGCAATGGGGTGGTGGTCCAGCCTGCCTATAAGGACAAGTTGAACATTACC 9252 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| ||||| |||||| |||| || ||||||||||| || || |||| ||||||||| Sbjct 9251 CAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACCCTGGAGGATGAAGGG 9192 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||| |||| | || | || ||||| | ||||| ||| ||||||| | || || Sbjct 9191 TGTTACATGTGTCTCTTCAGTACCTTTGGTTATGGGATGATCTCAGGAACACCCTGCCTC 9132 Query 1521 ACCCT 1525 ||||| Sbjct 9131 ACCCT 9127 >seq1820 Length=98464013 Score = 158 bits (174), Expect = 1e-33 Identities = 182/245 (74%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | || || |||||||| ||| ||||| |||||| ||||| | ||||| Sbjct 83115580 GAAGTCCTGATCGTGACATGGCAGAAAAAGAAAGCTCTAAGCCCGGAAAATGTAGCCACC 83115639 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 || || || | | ||||| || || ||||| || || || || || ||||||| || Sbjct 83115640 TTCAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTATAAGGACAAGTTGAACATTACC 83115699 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| ||||| |||||| |||| || ||||||||||| || || |||| ||||||||| Sbjct 83115700 CAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACCCTGGAGGATGAAGGG 83115759 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||| |||| | || || || ||||| | ||||||||| ||||||| | || || Sbjct 83115760 TGTTACATGTGTCTCTTCAATACCTTTGGTTATGGGAAGATCTCAGGAACACCCTGCCTC 83115819 Query 1521 ACCCT 1525 ||||| Sbjct 83115820 ACCCT 83115824 >seq545 Length=171630274 Score = 86.0 bits (94), Expect = 5e-12 Identities = 174/254 (69%), Gaps = 12/254 (5%) Strand=Plus/Minus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || |||||||| | | || ||| | |||| || || | || | | Sbjct 60846541 GCTGTTTCCCAGAAGATGGGCATCGACAGGAATGGAGACATGCCCTGACCCCGGCTCAGA 60846482 Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271 ||| |||| || || ||||||||||| | | ||||| || ||||||||| Sbjct 60846481 AATAAATTCAA----TTCCAAAAAATGACCACAACCTCTTCAGTAGAAGATAAACAGAAT 60846426 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA--GGCCTTTGA 2329 | ||| ||||| | || ||||| ||||||||| || | | |||| | | |||| | Sbjct 60846425 CTAGTATTTATGAGTAGGAAGACCTGGTTTTCAATTAC--TGAAAATAATTGATCTTTAA 60846368 Query 2330 ACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACT 2389 | ||||||| ||| | |||||||||||| | || || | ||||||| | ||| | | Sbjct 60846367 AGTACAGAATTAATTTAGTTCTCAGTAGAGAACTCAAGAAACCACCAC-AAGAGCTAATT 60846309 Query 2390 TTGTTGCAAAAAGT 2403 || |||| ||||| Sbjct 60846308 TTCTTGCCTAAAGT 60846295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414405044351620