Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq435 104 2e-17 seq1556 102 7e-17 seq1441 98.7 9e-16 seq1820 95.1 1e-14 seq545 95.1 1e-14 seq2049 86.0 5e-12 >seq435 Length=190850796 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 151101929 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 151101988 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || ||||||||||| |||||||| ||| |||||||||| ||||| Sbjct 151101989 GAGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGG 151102048 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| ||||| ||||| || | | || || || | ||||| Sbjct 151102049 G-ATACCCTCCTTGTCTTGAATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCCA 151102107 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || |||| || || || |||||||| ||||||| Sbjct 151102108 CCTCAAGGGTGATGGTCTTGGCCGTGAGGGTCTTCACAAAGATCTGCATCT 151102158 >seq1556 Length=121768101 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| |||||| || || || || || | || || || | || || Sbjct 87863160 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTACGGCCATCTTC 87863219 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| |||||||| ||| |||||||||| |||||| | | ||| ||||| Sbjct 87863220 CAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGG-ATACCCTCCTTGTCTT 87863278 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||||| |||||| || | | ||||| || | ||| || || | ||||| | | Sbjct 87863279 GAATTTTGGGTTTGACATTCTCAATGGTATCACTGGGCTCGACCTCAAGGGTGATGGTCT 87863338 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | ||| | || || || |||||||| ||||||| Sbjct 87863339 TGCCCCTGAGGGTCTTCACAAAGATCTGCATCT 87863371 >seq1441 Length=130397257 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 119049527 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 119049468 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || ||||||||| | |||||||| |||||||||||||| ||||| Sbjct 119049467 GAGCGTGCGGCCATCCTCTAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGTGG 119049408 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| ||||| ||||| || | || || || | ||| | Sbjct 119049407 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAA 119049349 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || ||||| || || || |||||||| ||||||| Sbjct 119049348 CCTCAATGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 119049298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 24229253 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 24229312 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 |||| || | || || |||||||||| |||| ||| |||||||||||||| ||||| Sbjct 24229313 GAGTG--CGGCCATCCTCCAGCTGTTTGCGGGCAAGTATCAGACGCTGCTGGTCAGGTGG 24229370 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | || ||||| ||||| ||||| || | | || || || | ||| | Sbjct 24229371 G-ATACCTTCCTTGTCTTCAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 24229429 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| |||| ||| | || || || |||||||| ||||||| Sbjct 24229430 CCTCAAGGGTGATGGTTTTGCCCCTGAGGGTCTTCACAAAGATCTGCATCT 24229480 >seq1820 Length=98464013 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| || || ||| |||||| || || ||||| || | Sbjct 87532223 GCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCTGA 87532282 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 ||||| || | || || ||||||||||| |||||||| |||||||| ||||| ||||| Sbjct 87532283 GAGTGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGACGCTGTTGGTCAGGTGG 87532342 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | || ||||| ||||| ||||| || | || || | | ||| | Sbjct 87532343 G-ATCCCCTTCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCATTGGGCTCGA 87532401 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || ||||| || || || |||||||| ||||||| Sbjct 87532402 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 87532452 >seq545 Length=171630274 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 39053 TCAA-GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAA 39111 |||| ||| |||| | ||| | ||||| || || ||| |||||| || || || || Sbjct 18158618 TCAATGCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAG 18158677 Query 39112 TCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC- 39170 | | || || || | || || ||||||||||| |||||||| ||| |||||||||| Sbjct 18158678 CCTGAGAGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCA 18158737 Query 39171 GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGA 39230 |||||| | | ||| ||||| ||||| ||||| || | || || || | Sbjct 18158738 GGTGGG-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGG 18158796 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| || || | ||||| | || ||||| || || || |||||||| ||||||| Sbjct 18158797 CTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 18158852 >seq2049 Length=49578535 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | |||| || || ||| |||||| || || || || | | Sbjct 13381125 GCCACCTCGCAGGCGCAGCACCGGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTTTGA 13381184 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || ||||||||||| |||||||| |||| ||||||||| ||||| Sbjct 13381185 GAGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGACCCTGCTGGTCAGGTGG 13381244 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| ||||| ||||| || | | || || || | ||| | Sbjct 13381245 G-ATCCCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATAGTGTCACTGGGCTCGA 13381303 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | |||| | || || || || || || |||||||| ||||||| Sbjct 13381304 CCTCAAGGCTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCATCT 13381354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429471235589165