Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1644 145 6e-30 seq435 120 2e-22 seq1 111 1e-19 seq2147 95.1 1e-14 seq274 91.5 1e-13 >seq1644 Length=117903854 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||| Sbjct 57521655 AGGCCCGTGATGTGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 57521714 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || |||||||| |||||||| || ||||| |||| | Sbjct 57521715 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 57521774 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 57521775 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 57521819 Score = 114 bits (126), Expect = 1e-20 Identities = 185/261 (71%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 114261 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTC 114320 || ||||||| || || || || || ||||||||||| ||||| || | || || Sbjct 40215876 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 40215817 Query 114321 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 114380 | | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 40215816 TTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 40215757 Query 114381 TCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 |||| ||| || | ||||| || | |||| | ||| | || | | || || || Sbjct 40215756 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATT- 40215699 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 114498 || | ||| |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 40215698 -----CCTGAGCGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 40215645 Query 114499 CGCTGCCACGATACCGTTCAG 114519 | | || ||||| | ||| || Sbjct 40215644 CACAGCGACGATGCAGTTTAG 40215624 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| || || ||||| ||| || Sbjct 57526181 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATCCCCTTCTTCTCTGGCGGAAAAT 57526240 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| | |||| |||||||| ||| || ||||| |||||||| || || ||||| Sbjct 57526241 CCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 57526300 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 || |||||||| | |||||||| || |||| Sbjct 57526301 GACAGCTCTTTAGCATTTGTGGATCC-CTGA 57526330 >seq435 Length=190850796 Score = 120 bits (132), Expect = 2e-22 Identities = 186/261 (71%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 114261 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTC 114320 || ||||||| || || || || || ||||||||||| ||||| || | || || Sbjct 174408235 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 174408294 Query 114321 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 114380 | | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 174408295 TTAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 174408354 Query 114381 TCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 |||| ||| || | ||||| || | |||| | ||| | || | | || || || Sbjct 174408355 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATT- 174408412 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 114498 || | ||| |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 174408413 -----CCTGAGCGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 174408466 Query 114499 CGCTGCCACGATACCGTTCAG 114519 | | || ||||||| ||| || Sbjct 174408467 CACAGCGACGATACAGTTTAG 174408487 >seq1 Length=210400635 Score = 111 bits (122), Expect = 1e-19 Identities = 184/261 (70%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 114261 GATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTC 114320 || ||||||| || || || || || ||||||||||| ||||| || | || || Sbjct 66233987 GAAGAGCTCCTTGTGGAGGTTCCTTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCT 66234046 Query 114321 TCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGT 114380 | | ||| | |||||| || || ||||||||||| ||||| |||||||| ||||||| | Sbjct 66234047 TTAAAGGGCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAAT 66234106 Query 114381 TCTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 |||| ||| || | ||||| || | |||| | ||| | || | | || || || Sbjct 66234107 TCTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATT- 66234164 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 114498 || | ||| |||| ||||| || ||||| || |||||||||||| ||||| | Sbjct 66234165 -----CCTGAGCGGCGGCCAGGGCAGTTCACCGTTCTTGCCGATGCCCATGTTCTGG-GA 66234218 Query 114499 CGCTGCCACGATACCGTTCAG 114519 | | || ||||| | ||| || Sbjct 66234219 CACAGCGACGATGCAGTTTAG 66234239 >seq2147 Length=50472720 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || | || || || ||||| || | || | || || | Sbjct 4191962 ATGAGCTCCTTGTGGAGGTTCCTGGAGTTCTCTACTGAGAACGAAATTAATTCTATCCTT 4191903 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 4191902 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 4191843 Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 ||| ||||| ||| || || || || | |||| | ||| | || | | || || || Sbjct 4191842 CTGTTTACCTTCTATC-GAGGAGGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATT- 4191786 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 114499 ||| | || |||| ||||| || || || || ||||| ||||||| | | || Sbjct 4191785 -----TCTGAGTGGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTTTGGGAC 4191731 Query 114500 GCTGCCACGATACCGTT 114516 |||| ||||| | ||| Sbjct 4191730 ACTGCGACGATGCAGTT 4191714 >seq274 Length=204313951 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || ||||||||||| ||||| || | || || | | ||||| |||||| || || Sbjct 127557828 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 127557769 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| ||| || Sbjct 127557768 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 127557721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406092883630630