Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1644 125 5e-24 >seq1644 Length=117903854 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 57521655 AGGCCCGTGATGTGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 57521714 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||| |||||||| ||||| || || ||||| || | Sbjct 57521715 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 57521774 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 57521775 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 57521818 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/173 (73%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| ||||| || ||||||||||| ||||| || || || || |||| || Sbjct 57526159 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATC 57526218 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || ||||| ||| || ||| | |||| |||||||| ||| || ||||| || Sbjct 57526219 CCCTTCTTCTCTGGCGGAAAATCCCAAGCTATCCAGAAAGTCTCGGGATCCATTGGCATC 57526278 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 27661 |||||| || || ||||| || |||||||| | |||||||| || |||| Sbjct 57526279 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC-CTGA 57526330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369443229643355