Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq1997 178 2e-39 seq1 111 2e-19 >seq1997 Length=47448759 Score = 178 bits (196), Expect = 2e-39 Identities = 230/318 (72%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 8269 GAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 |||||| ||| ||||| | ||| | | || ||||| || || ||||| | |||| Sbjct 19539472 GAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCTTTCACGTTATTGCAGAT 19539413 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 ||||||||||| | || | |||| ||| | ||| ||||| ||||| || || ||||| Sbjct 19539412 GAGAGACTGAATTGAGGCCGTGTTGATGATTCTGAAACCCACTTCTCCACCAAAAGTGCT 19539353 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 ||||||||||| | || || || ||||| || |||| || ||||| | |||||| || Sbjct 19539352 TGGCTTCCAGTAAGCGGGAGAACATATGACATTACCCATAAGTCCTTTCAAGGAGAATGG 19539293 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 || || | || | || |||||||||||||||| | ||||| |||||||| |||| Sbjct 19539292 TGCTCCAACTTCTACCATTGTCTCACCGAAGATGGCATCCGGACGAGGCTTTTCTACCAG 19539233 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8568 | | | |||||||||| ||| |||| ||| || || || || | | || ||||| Sbjct 19539232 AAGGGCAGGATACAGCTCCATAGCATCGATGTCACCATAGAGTGCTTTCAACTCTGCAGC 19539173 Query 8569 GATCTCCTTTTCTCCTGT 8586 || ||||| |||||||| Sbjct 19539172 CATTTCCTTCTCTCCTGT 19539155 Score = 123 bits (136), Expect = 4e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 19536602 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 19536543 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || |||||||| | || | |||||||||||| Sbjct 19536542 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 19536483 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 19536482 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 19536445 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | |||||||| || || | Sbjct 19538323 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 19538264 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | || || |||||||||| || ||| | |||| || || | || ||| | Sbjct 19538263 AGTAACATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTAGTTCTGGTCATGAATTT 19538206 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | | | |||||||| | | |||| Sbjct 19538205 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGCGTATTAAACTCAGCAGCAATAC 19538146 Query 9122 GATTTTGGTACTGGAA 9137 |||||||||||||||| Sbjct 19538145 GATTTTGGTACTGGAA 19538130 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | ||||| || || || | ||| || ||||| || || | Sbjct 19535989 TCACCTTTCACACCCAGGGGAGTCGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 19535930 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||| || ||||| |||||||||||| ||| | ||||| || ||||| | Sbjct 19535929 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAGGTT 19535870 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || || |||||||||| | ||| |||| Sbjct 19535869 GGTGGACTCTCAATCAAATGTGCTCTGGCTGA 19535838 >seq1 Length=210400635 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || || |||| || ||||| || ||||| ||||||||||| |||| | Sbjct 166173959 TCTTGACAATGTTAAAGCCCATCTCACCGCCAAATGTGCTTGGCTTCCAGTATTCCGGAG 166173900 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 166173899 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 166173840 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | || | || | ||||| Sbjct 166173839 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCAGGATAGAACTCCA 166173780 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || | || | ||| || || |||||||| |||||| Sbjct 166173779 ACGCATCAATGTCTCCATACAACTCCTCCAATTCCGCTGCCATCTCCTTCTCTCCT 166173724 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 166161666 CTCACCCCATGACCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 166161609 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 166161608 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 166161549 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| |||||| Sbjct 166161548 CAGGTATGAACTTCCTCC 166161531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716749509563200