Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1820 127 2e-24 seq1195 125 7e-24 seq699 105 6e-18 seq848 100 3e-16 seq274 89.7 5e-13 >seq1820 Length=98464013 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | |||||| ||||| ||| ||| ||||| ||||||||||| || Sbjct 87532223 GCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCTGA 87532282 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||| |||||||| |||||||| ||||||||||| | || Sbjct 87532283 GAGTGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGACGCTGTTGGTCAGGTGG 87532342 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACA-CAGTGTCGCTCGACTCCA 41813 | | || ||||| | ||| |||| |||| || || ||||| | | ||| | Sbjct 87532343 GATCCCCTTCTTGT-CTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCATTGGGCTCGA 87532401 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || ||||| || ||||| || || |||||||| Sbjct 87532402 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 87532450 Score = 100 bits (110), Expect = 3e-16 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | |||||| ||||| ||| ||| ||||| ||||| ||||| || Sbjct 25100026 GCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 25100085 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||| | || || ||||| ||||||||||||||||| |||| ||||| | || Sbjct 25100086 GAGCATGCAGCCATCCTCCAGCTGTTTGCCGGCGAATATCAGATGCTGCTGGTCAGGTGG 25100145 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | || |||||||| | ||| |||| |||| Sbjct 25100146 GAAGCCCTCCTTGT-CTTGAATTTTGGCTT 25100174 >seq1195 Length=124281992 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || || ||| ||||| ||||| ||||| || Sbjct 115889539 GCCACCTCGGAGACGGAGGACGAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 115889598 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||||| | || || |||||||| ||||| || |||| | ||| ||||| | || Sbjct 115889599 GAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115889658 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 115889659 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 115889718 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || ||||| ||||| ||||| ||||| ||||||||| Sbjct 115889719 CTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCATG 115889767 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || ||||| ||| ||| ||||||||||| ||||| || ||||||||| Sbjct 115889321 AGACGGAGGACGAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGC 115889380 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || |||| | ||| ||||| | || | || |||| Sbjct 115889381 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCC 115889440 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||| || || | || Sbjct 115889441 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACTTCAAGGGTG 115889500 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| ||||| ||||||||| Sbjct 115889501 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 115889539 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||| ||||| || || || || |||||||||||| | || || Sbjct 115888874 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAGAGGGTGCGCCCATCTTCC 115888933 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| ||||| || |||| | ||| ||||| | || | || |||||||| | Sbjct 115888934 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 115888993 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || ||| ||| |||| | || ||||| || | ||| ||||| | || || || Sbjct 115888994 ATCTTTGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 115889049 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||||| ||||| ||||| ||||||||| Sbjct 115889050 CTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 115889083 >seq699 Length=159171411 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| || || ||||| || || ||||| Sbjct 77802909 AGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGG 77802968 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 77802969 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCC 77803028 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | ||||| || | |||||| |||| || Sbjct 77803029 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACTTCCAGGGTG 77803088 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 77803089 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77803126 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | ||||| ||||| || ||| ||||| || || ||||| || Sbjct 77803128 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAA 77803187 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || || || | ||| ||||| | ||| Sbjct 77803188 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 77803247 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || || || || ||| || ||||| | ||||| || | ||||||| Sbjct 77803248 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACC 77803307 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 77803308 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77803354 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| |||| || ||| ||||| ||||| || || Sbjct 77802668 ACAGCCACCCCTCAGACGCAGGACCAGGTGCAAGGTCGACTCTTTCTGGATGTTGTAATC 77802727 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 77802728 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 77802787 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || || || || ||| || ||||| | ||||| || | ||| Sbjct 77802788 GGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTC 77802847 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 77802848 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77802898 >seq848 Length=158406734 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| ||| ||||| || || || || |||||||||||| | || || Sbjct 109165388 ACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAGAGGGTGCGCCCATCTTCC 109165329 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| || || || || |||| | ||| ||||| | || | || |||||||| | Sbjct 109165328 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 109165269 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||| ||||| | || || || ||| Sbjct 109165268 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAAGGTGATGGTCTTA 109165209 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| ||||| ||||||||| Sbjct 109165208 CCAGTCAGGGTCTTCACGAAGATCTGCATG 109165179 >seq274 Length=204313951 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||| | || | Sbjct 111212378 ACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAATGCAGCCATCTTTC 111212319 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| |||| | ||| | || ||||| ||| | Sbjct 111212318 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTAGGTGGGGATGCCTTCCTTATCCTGG 111212259 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | ||||| || | |||||| |||| || || || || Sbjct 111212258 ATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 111212199 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || || |||||||| Sbjct 111212198 CCGGTCAGGGTCTTCACAAAGATCTGCAT 111212170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462221912146000