Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq301619 248 9e-61 seq301777 163 3e-35 seq117952 143 3e-29 seq289273 114 1e-20 seq303989 102 8e-17 >seq301619 Length=432943 Score = 248 bits (274), Expect = 9e-61 Identities = 576/862 (67%), Gaps = 10/862 (1%) Strand=Plus/Plus Query 16670 ATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATA 16729 ||||| || || |||| || | || || || |||||||| | || || || || || Sbjct 188397 ATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTA 188456 Query 16730 TTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCAGTTCGG 16787 || ||||| || ||||| ||||| || ||||| || | | |||||||| Sbjct 188457 TTATCCATCAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAA--AACCCAGTTCCA 188514 Query 16788 CGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTA 16847 || | ||| || || ||||| || || ||||| |||||| ||| ||||| || | Sbjct 188515 GCATAAGTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAA 188574 Query 16848 TAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC-TTCCTTA 16906 | || || || | ||||| || | || || ||||| ||| || || | | Sbjct 188575 TGAGCTTCACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGA 188634 Query 16907 ATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACAT 16966 || | || | ||| | ||| || ||| | ||| | || ||||| || ||||| || Sbjct 188635 TTATTTCTTTTA-CTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTGAATATCAGGCAG 188693 Query 16967 GCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCG 17026 || || || || ||||| ||||| |||||||| |||||||| || | |||||| | || Sbjct 188694 GCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCA 188753 Query 17027 GGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATA 17086 |||||| ||||| |||||| | ||| ||||||| | || || ||||||||| | || Sbjct 188754 GGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATG 188813 Query 17087 CCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATC 17146 || || || | ||||| || | | ||||| | || || || ||||||| | | || Sbjct 188814 CCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAGTC 188873 Query 17147 CATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAAT 17206 || | |||| || || || | ||| | ||| |||||| || ||||| || || Sbjct 188874 CAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAG 188933 Query 17207 A--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 | | ||| |||| | | |||| | || || || || || || || |||||||||| Sbjct 188934 AGAAATTCCCTTTCTTTGG--GGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTT 188991 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 | || |||||||| |||||||| || || || || || || || |||||||| | | || Sbjct 188992 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTT 189051 Query 17325 GAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGA 17384 ||||||| | ||||| ||| | | ||||| || || ||||| || || || || | Sbjct 189052 GAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAA 189111 Query 17385 AAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCT 17444 | || | || | | || || |||||| | || | ||| | || ||||| | Sbjct 189112 AGAAAGTCAGAACACGCGATATAAAATATCTCTCCACAGGTTTCAGGGATTCCCAGTGCC 189171 Query 17445 TTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTAT 17504 | ||||||| | ||| || ||||| | |||||||| ||| | || || | | Sbjct 189172 GGAGGTCTTTGGTAAGATCAACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCGTGT 189231 Query 17505 ACATATTCCAAATATCATTGTA 17526 |||| | ||| || |||| ||| Sbjct 189232 ACATCTGCCAGATGTCATGGTA 189253 >seq301777 Length=185553 Score = 163 bits (180), Expect = 3e-35 Identities = 475/717 (66%), Gaps = 21/717 (3%) Strand=Plus/Minus Query 16669 CATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATAT 16728 |||||| || || ||| || | || || || |||||||| || || | || || || Sbjct 170346 CATTCTCTGATATCCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTTCAGTGAAAT 170287 Query 16729 ATTCTCCATGAAATCAAAAGGA-TTAGTAGCT-GAAAATATTT-TAGAGTACCCCAGTTC 16785 ||||||| |||| ||||| ||| || || | ||||| || || | | ||||||| Sbjct 170286 ATTCTCCGTGAAGTCAAATGGACTTTCTACTTTGAAAACCTTGCTAAAAT---CCAGTTC 170230 Query 16786 GGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCC 16845 || | ||| | | ||||| || || ||| | |||||| ||| ||||| || Sbjct 170229 CAGTATAAGTCTGTTGCCCACAAACTCGATGTATGGCTTCATTAAAATGCAATTCATCCC 170170 Query 16846 TATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC-TTCCT 16904 | || || || || || | || | || || ||||| ||| || || | Sbjct 170169 AGTGAGCTTCACAGGCAGGGCCTAGGTGAGGAACTCCTGTTCTATCCTAACAGCATTGAT 170110 Query 16905 TAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGAC 16964 | || | || | ||| | || |||||| | ||| | || ||||| || ||||| | Sbjct 170109 GATTATTTCTTTTA-CTCTCTGCTGTGACGGTTTGTGTATCAGGTGTTTGAATATCAGGC 170051 Query 16965 ATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTA----GAAAATGTC 17020 | || || || || ||||| | ||| |||||||| ||||||| ||| ||| |||| Sbjct 170050 AGGCAAAGTCACAGTGTAAACTCTCATCTCTGCTAATAAGTTAGTTCACTGGAACATGTG 169991 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| ||||| ||||||| | ||| |||||| | || || ||||||||| Sbjct 169990 AGGCCAGGCATCATTCCTTGTTTCTTGAGCCAGAATATCAATACAAAAGAACCAGAAAAG 169931 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGC-GTACGTCGCGTCTTTGTT 17139 || || || | || | ||||| || | | | || | || || || || |||| Sbjct 169930 AAGATGCCTCCCACTGCAGCAAAGGCTACAACATGCTCTCCATTAAGTAGCCTCCTTGTC 169871 Query 17140 ACGAATCCATTTC-TGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 ||||||| | | | || ||| | ||| || || | || |||||| || |||| Sbjct 169870 CTGAATCCAATGCAAGGCCCAACTTGCCTTCTT-TTTGACACAGGGCATCGTCTCAATGG 169812 Query 17199 CCTTAA--ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | |||| ||| || || || | ||| | || || || || || || || || Sbjct 169811 CGTTGATGATAAATTCCCTCTT---TGGA-GTCTTTAATGTAAGTGTCAATAAGGAGACT 169756 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 | ||||||| || |||||||| |||||||| || || || || || || || ||||||| Sbjct 169755 GCACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGTGGGCTTC 169696 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 | | ||||||||| | ||||| ||| | | ||||| || || ||||| || Sbjct 169695 TGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 169639 >seq117952 Length=1479372 Score = 143 bits (158), Expect = 3e-29 Identities = 293/431 (68%), Gaps = 6/431 (1%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || |||||||| || || | || || | || || || ||||| || | || || || Sbjct 1359834 ACTCCCATTCTCTGATATTTGCCTACTCTCTTCTCAAAGAAGTTTGTCTCTCCTTCCAGT 1359893 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCA 16781 || |||||||||||||| ||||| ||||| || ||||| || | | |||| Sbjct 1359894 GAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAA--AACCCA 1359951 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| || | |||||| || ||||| || || ||||| |||||| ||| |||| Sbjct 1359952 GTTCCAGCATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAATTCA 1360011 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC-T 16900 | || || || || || | || || || || || ||||| || || | Sbjct 1360012 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTTCTATCCTGACAGCAT 1360071 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 | | | || | || | ||| || ||| | ||| | ||| | || ||||| |||||| Sbjct 1360072 TGATGATTATTTCTTTTA-CTCTTTGCTCCAATGGTTTGTGTGTCAGGTGTTTGAACATC 1360130 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || || || ||||| ||||| ||||| | |||||||| | |||||||| Sbjct 1360131 AGGCAGGCAAAGTCACAGTGTAAACCCTCAACTCTGTTAATAAGTTCACTGGAAAATGTG 1360190 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| |||| ||||||| | ||| ||||||| || || || ||||||||| Sbjct 1360191 AGACCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAG 1360250 Query 17081 AATATACCCTC 17091 || || || || Sbjct 1360251 AAGATGCCTTC 1360261 >seq289273 Length=322959 Score = 114 bits (126), Expect = 1e-20 Identities = 284/428 (66%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 17000 ATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATC 17059 |||||||| || |||||||| || | |||| |||| ||||||| | || |||||| Sbjct 72673 ATAAGTTCATTGGAAAATGTAAAGCTTCACATCAGTCCTTGTTTCTTGAGGCAGAATATC 72732 Query 17060 GCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCG 17119 | || || || ||| ||||||| || || || || | ||||| || | | | ||| Sbjct 72733 GATGCAAAAGAACCAAAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACATTCT 72792 Query 17120 GCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATG 17179 | | || || |||||||| | |||||| |||| || || |||| ||| | Sbjct 72793 CCAAAAGTAGCCTCTTTGTTCCCAATCCAACCTAAGGCCCAATCTGCCTTTTTCTTGACA 72852 Query 17180 CAATCCATCGTTTCTATGGCCTTAAATA---ATTTCTCTTTTTCCTGTAGGTCGATTATA 17236 ||| || ||| | |||| || || | ||||| || || || || || | || Sbjct 72853 CAAGGCAACGTCTTAATGGTGTTGAAGAGAAATTTCCTTTCTT--TGCAG-TCTTTAATG 72909 Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || | || || || || ||||| ||||| || | ||||| |||||||| || || ||| Sbjct 72910 TAAATGTCAATAAGGAGACTGTATATTTCAGAATATATGTGTTCCATGGCAATTTGGAAT 72969 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356 || || || | | |||||| ||||||||||| | |||| || | | || Sbjct 72970 CCATAGAAATAGCAGGCTTCTATAATTTGAACTTCTTGGCTAAATCACTCTACCAAGCTT 73029 Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTT 17416 || || || ||||| || || || || || || |||| | ||| || |||||| || Sbjct 73030 TCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGTGATATAAAATATCTT 73089 Query 17417 TCGTCCGG 17424 || || || Sbjct 73090 TCCTCAGG 73097 >seq303989 Length=535067 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | || |||||| ||||||||||| Sbjct 320200 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 320141 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || ||||||||||| || || || || | ||||| | Sbjct 320140 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 320081 Query 17106 C 17106 | Sbjct 320080 C 320080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515364216458520