Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq301619 255 6e-63 seq289273 138 1e-27 seq117952 136 4e-27 seq96983 111 2e-19 seq303989 98.7 1e-15 >seq301619 Length=432943 Score = 255 bits (282), Expect = 6e-63 Identities = 584/877 (67%), Gaps = 4/877 (0%) Strand=Plus/Plus Query 15908 ATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATA 15967 ||||| || || || | || | || || ||||||||||| |||| || | || || Sbjct 188397 ATTCTCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTA 188456 Query 15968 TTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTA 16027 || ||||| || ||||| ||||| || || | ||| | ||||||||| Sbjct 188457 TTATCCATCAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCCAGTTCCAGC 188516 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATA 16087 | | ||| || || ||||| || || ||||| |||||| |||||| || || || Sbjct 188517 ATAAGTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAATG 188576 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 || || || | |||| ||| | || | ||||||||| ||| || | | || Sbjct 188577 AGCTTCACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATT 188636 Query 16148 ATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCG 16207 || || | ||| || || ||| | || | |||||||| || || || || || Sbjct 188637 ATTTCTTTTACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTGAATATCAGGCAGGCA 188696 Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 ||||| || |||| || || |||||||| |||||||| |||| ||| || | || ||| Sbjct 188697 AAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCAGGC 188756 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 || ||||| |||||| | ||||||||||| | ||| || || |||||| | || || Sbjct 188757 ATCAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCCT 188816 Query 16328 TCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCAT 16387 || || | ||||| || | | ||||| | || ||||| ||||| | | | |||| Sbjct 188817 TCCACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAGTCCAA 188876 Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACA 16445 | |||| || || || | || | |||| |||||| || ||||| || | | | Sbjct 188877 CGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAGAGA 188936 Query 16446 ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 | ||| | |||| | || | || || || ||||| || | |||||||||||| | Sbjct 188937 AATTCCC--TTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAG 188994 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565 | |||||||| || ||||| || || || |||||||| || || || || | | ||| | Sbjct 188995 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAA 189054 Query 16566 CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625 |||| | |||||| ||| ||| ||| ||||| || || || || ||||| ||||| | Sbjct 189055 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGA 189114 Query 16626 ACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTA 16685 | | || | || || |||||| | || ||| | | || | ||| | | Sbjct 189115 AAGTCAGAACACGCGATATAAAATATCTCTCCACAGGTTTCAGGGATTCCCAGTGCCGGA 189174 Query 16686 AATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACA 16745 ||||||| | ||| || ||||| | ||||||||| ||| | || || | |||| Sbjct 189175 GGTCTTTGGTAAGATCAACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCGTGTACA 189234 Query 16746 TTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 | | ||| || |||| ||| | || ||||| | ||| Sbjct 189235 TCTGCCAGATGTCATGGTACTCGATAGGAAAGATGAC 189271 >seq289273 Length=322959 Score = 138 bits (152), Expect = 1e-27 Identities = 291/429 (68%), Gaps = 10/429 (2%) Strand=Plus/Plus Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297 |||||||| |||||||| || || | | ||| |||| ||||||| | ||||||||| Sbjct 72673 ATAAGTTCATTGGAAAATGTAAAGCTTCACATCAGTCCTTGTTTCTTGAGGCAGAATATC 72732 Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357 | ||||| || || ||||||| || || || || | ||||| || | | | ||| Sbjct 72733 GATGCAAAAGAACCAAAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACATTCT 72792 Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417 | | ||||| ||||| || | |||||| |||| || || |||| || | | Sbjct 72793 CCAAAAGTAGCCTCTTTGTTCCCAATCCAACCTAAGGCCCAATCTGCCTTTTTCTTGACA 72852 Query 16418 CAATCCATCGTTTCTATGGCCTTAAACA---ATTTCTCTTTTTCCTGAATATCGATTATA 16474 ||| || ||| | |||| || || | ||||| || || || | || | || Sbjct 72853 CAAGGCAACGTCTTAATGGTGTTGAAGAGAAATTTCCTTTCTT--TGCAG-TCTTTAATG 72909 Query 16475 TACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAAT 16534 || | ||||| || | |||||| ||||| || | ||||| || ||||| || || ||| Sbjct 72910 TAAATGTCAATAAGGAGACTGTATATTTCAGAATATATGTGTTCCATGGCAATTTGGAAT 72969 Query 16535 CCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTC 16594 |||||||| | | || || ||||| ||||| | ||||| || ||| | | Sbjct 72970 CCATAGAAATAGCAGGCTTCTATAATTTGAACTTCTTGGCTAAATCACTCTACCAAGCTT 73029 Query 16595 TCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATT 16652 ||||| || || || |||||||| ||||| || ||| || ||||| | || |||||| Sbjct 73030 TCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGTGAT--ATAAAATATC 73087 Query 16653 TTTCGTCAG 16661 |||| |||| Sbjct 73088 TTTCCTCAG 73096 >seq117952 Length=1479372 Score = 136 bits (150), Expect = 4e-27 Identities = 287/428 (67%), Gaps = 0/428 (0%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || |||||||| || || | | || | || || |||||||| || | ||| || | Sbjct 1359834 ACTCCCATTCTCTGATATTTGCCTACTCTCTTCTCAAAGAAGTTTGTCTCTCCTTCCAGT 1359893 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGT 16021 || ||||| ||||| || ||||| ||||| || || | ||| | |||||| Sbjct 1359894 GAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCCAGT 1359953 Query 16022 TCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATT 16081 ||| | | |||||| || ||||| || || ||||| ||||||| |||||| || Sbjct 1359954 TCCAGCATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAATTCATC 1360013 Query 16082 CCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCT 16141 || || || || || | || | || || | ||||||||| || || | Sbjct 1360014 CCAATGAGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTTCTATCCTGACAGCATTG 1360073 Query 16142 TTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGA 16201 | || || || | ||| | || | ||| | || | |||||||| ||||| || Sbjct 1360074 ATGATTATTTCTTTTACTCTTTGCTCCAATGGTTTGTGTGTCAGGTGTTTGAACATCAGG 1360133 Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || ||||| || |||| || || ||||| | |||||||| ||||||| || | Sbjct 1360134 CAGGCAAAGTCACAGTGTAAACCCTCAACTCTGTTAATAAGTTCACTGGAAAATGTGAGA 1360193 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| |||| ||||||| | ||||||||||| ||||| || || |||||||| Sbjct 1360194 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAG 1360253 Query 16322 ATACCCTC 16329 || || || Sbjct 1360254 ATGCCTTC 1360261 >seq96983 Length=126056 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | ||| ||||| |||| |||| Sbjct 32465 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 32406 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 32405 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 32346 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 32345 CCACCACTCTTTCC 32332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || |||||||| |||||||| || ||||||||||||||||| Sbjct 43048 AACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 42989 Query 15985 GGGATT 15990 |||||| Sbjct 42988 GGGATT 42983 >seq303989 Length=535067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 320198 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 320139 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 320138 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 320080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509258858623480