Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq315498 264 8e-66 seq138848 233 1e-56 seq123294 138 8e-28 seq301952 136 3e-27 seq282661 136 3e-27 seq160483 104 2e-17 seq236152 93.3 3e-14 seq314877 86.0 5e-12 >seq315498 Length=1611380 Score = 264 bits (292), Expect = 8e-66 Identities = 265/344 (77%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || ||| ||| ||| || ||||||||||||| |||||||||||| | |||| Sbjct 1289061 AAAACACCTTCATATAAATCATTATTTTCATATACTTCAAGTTTGTACTTAATGCCTTTC 1289002 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 || || | |||| ||||| |||| ||| |||||| | |||||| |||||||| | | Sbjct 1289001 TCCTCCTAGACATCTGAAAGGACACCTGGGTATTCTGAGAGAAGTTTATATTTCTCCAAA 1288942 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 || | |||||||||||| ||||||| ||||||||| |||||||| || |||||||||||| Sbjct 1288941 TCGATTTCTGGAAAAAAAGTGTCACTTTCAAAGTCCTGCATGATGCTTGTCACAAACAGT 1288882 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 ||||||| || || |||||| ||||| ||||| ||||| | ||||| | | | | Sbjct 1288881 TTAAGATAGCCTG----ACTCATGGCTTCCTTATAAACAGAGTTGCCTCCTACAAGCTAA 1288826 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 ||||||| ||||||| ||||||||||||| || || | |||||||| ||||| | | Sbjct 1288825 ACCATGTTTACTTTACTTGCTAATTCTGGTTGCTCAATGAGTTTTAAGATGTCATCCAGA 1288766 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTC 4298 || | || | || || |||| ||||||| ||||| || || Sbjct 1288765 CTTTAGGCAAGAATGTGTGCTCCTGGTGGAAGTTCCTTGAGATC 1288722 >seq138848 Length=417828 Score = 233 bits (258), Expect = 1e-56 Identities = 355/515 (69%), Gaps = 39/515 (8%) Strand=Plus/Plus Query 3977 TCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAA 4036 |||| |||||||||||||||||||||||||| | |||||| || | |||| | |||||| Sbjct 240083 TCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCCGGACATCACAAAGAA 240142 Query 4037 CACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAG---- 4092 || || | |||| | ||||||||||||||| | ||||| ||||| || | | Sbjct 240143 CATCTGAGTTTTCTGAGAGAAGTTTGTATTTCTCCATATCAATTTCTGAAACACACACAC 240202 Query 4093 ----------------------------------GTGTCACATTCAAAGTCTTGCATGAT 4118 ||||||| |||||| || |||||||| Sbjct 240203 ACACACACACACACACACACACACACACACACATGTGTCACTTTCAAAATCCTGCATGAT 240262 Query 4119 CCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACT 4178 || |||||| | ||||||| || | | | |||| |||| ||||| ||||| || Sbjct 240263 TCTCATCACAAGCCACTTAAGATGGCCTAGCTGGTTCATGGCTTTCTTATAAACAGAGCT 240322 Query 4179 ACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTT 4238 |||| | |||||| || | |||||||||||||||||||||| || | | |||| Sbjct 240323 GCCTCGCACTATCCAAACTCTCTCTACTTTATTTGCTAATTCTGCTTGCTTAATGAGTTG 240382 Query 4239 TAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTC 4298 ||| |||||||| | ||| | || | ||||||| ||| ||||| | | | | |||| Sbjct 240383 TAAGGCATCATCCAGACTATGTGCAAGAAAATGAACTCCTGGTGGAGGTTTCATGGGTTC 240442 Query 4299 CTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAA 4358 | |||||||| | |||||||| | || ||||||| |||||||||||||| ||||| Sbjct 240443 TCTACTGAGAACTAAATTAATTCCATCCTTCAAAGGCCTATTCTTCTCAGGAATGGAGAA 240502 Query 4359 CCAAGTCTTTTTACCCATAA-TCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAG 4417 ||| || || |||||||||| |||| | ||||| ||| || ||| ||||| | | | Sbjct 240503 CCAGGTTTTCTTACCCATAATTCACCAGATTCTAGTTACCTCCTACGGAAGAGGATGGGG 240562 Query 4418 TCATTCTTTGGAAATGTTTAAAATCATTCATAAGT 4452 | |||| ||||| || || ||||| ||||| Sbjct 240563 TTGTTCTCTGGAAGCACTTGAATTCATTTCTAAGT 240597 >seq123294 Length=241001 Score = 138 bits (152), Expect = 8e-28 Identities = 97/111 (87%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||||||| ||||| |||||||||||| ||||||| ||||||||| ||||| Sbjct 195255 AAGTTTATATTTCTCTAAATCAATTTCTGGAAAAAACGTGTCACTTTCAAAGTCCTGCAT 195196 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| ||||||||||||||||||| || ||| | ||||| ||||| || Sbjct 195195 GATCCTTGTCACAAACAGTTTAAGATGGCCTGGCTGGCTCATGGCTTCCTT 195145 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | || ||||| || ||||||||||| Sbjct 182059 CTTCAGTTCTCTACTGAGAACTAAATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGG 182000 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||||||||| ||||||||||||| | |||||||||| || Sbjct 181999 AATGGAGAACCAAGTCTTCCTACCCATAATCACCAGATTCTGTTTACCT 181951 Score = 107 bits (118), Expect = 1e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4166 TATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCT 4225 |||| ||||| | ||||| | |||||| ||| ||||||||||||||||||||||||| | Sbjct 192498 TATAAACAGAGTTGCCTCCTACTATCCAAACCTTGTCTACTTTATTTGCTAATTCTGGTT 192439 Query 4226 GTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | || | ||||| || |||||||| | ||| || || | ||||||||||| ||||| Sbjct 192438 GCTCAATGAGTTTCAAGGCATCATCAAGACTTTTGGCAAGAAAATGAGCTCCTGGTGGA 192380 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| |||||||||||||||||||||||||| | ||| Sbjct 202160 AAAACACCTTCACATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTT 202101 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| ||||||||||| ||| ||| Sbjct 202100 TCCTCCTGGACATCAGAAAGAACACCTGGGTAT 202068 >seq301952 Length=229368 Score = 136 bits (150), Expect = 3e-27 Identities = 135/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 3963 TTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTG 4022 ||| ||||||| |||||| | ||| |||| | ||||||||||||| |||| | || | Sbjct 4559 TTTATATTAATCATTCTTTTTATAGACTTTGAGGTTGTACTTAATACCTTTCACCTCCTA 4618 Query 4023 CACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTC 4082 ||||| ||||||||||| ||| ||||| | || || ||| |||| | ||||| || Sbjct 4619 CACATCAGAAAGAACACCTGGGTATTCAGAGAGAACTTGATATATCTCCAAATCAACATC 4678 Query 4083 TGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTA 4137 ||| |||| ||||||| ||||||||| | ||||||| |||||||| |||||| Sbjct 4679 TGGGGAAAATGTGTCACTTTCAAAGTCCTACATGATCTGTGTCACAAATAGTTTA 4733 >seq282661 Length=382197 Score = 136 bits (150), Expect = 3e-27 Identities = 175/240 (73%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | |||| | | || ||||| | ||||| |||||||| || ||||| | |||||| Sbjct 229631 TTAGCCCACATAGCGGACTATGGGGTTGACGCAGGTGCAGCCCACGGTCACCAACATCTT 229690 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 ||| |||| || || | |||||| | ||| | | | |||| || || |||||||| Sbjct 229691 CTCCAGCCGGAAGGAGTGGGGGCAGTGCTGAGACTCCCTCCGCAGGACGAGGATCTCTTG 229750 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTA---CATTCCCATCAGCATTAACACATCC 27112 |||||| ||||| || ||| || || ||| | |||||| ||||| | | || || Sbjct 229751 TTGGATGGGGACGGAATTCCTGGAGTGGTCCACCTCATTCCTATCAG---TGATGCAGCC 229807 Query 27113 TAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 |||| ||| ||||| || ||||| ||||||| ||||||||| || | || ||||||| Sbjct 229808 CAAGTGGCGGCACTTCGCCTCCCAGATCACAGGGGGATATCTCTCGGGGTCGGCATTGCG 229867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 26948 GTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAA 27007 ||| ||||||||||| ||||| |||||||| |||||||| |||| |||||| ||| || Sbjct 190177 GTGGACAATGGGAGTGACGCAGGTGCAGCCAACAGTCACCAGCACCTTCTCCAGCTGGAA 190118 Query 27008 TGAATTAGGGCAGGGTTGATGCCCTT--TGCGCACCACTAGAATCTCTTGTTGGATAGGG 27065 || || |||| || || ||| |||| | || || |||||||| |||| || Sbjct 190117 AGAGGCAGAGCAGCCCTG--GCGCTTCCTGCGGAGGACCAGGATCTCTTGCTGGACGGGC 190060 Query 27066 ACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACAC 27125 || ||||||||| || |||| | || || | |||| || || || | || | |||| Sbjct 190059 ACAGAGTTCATGGAGTTGTCTTCCTTGCCCTGGGCATCGACGCAGCCCAGGTGCCTACAC 190000 Query 27126 T 27126 | Sbjct 189999 T 189999 >seq160483 Length=205688 Score = 104 bits (114), Expect = 2e-17 Identities = 123/165 (75%), Gaps = 5/165 (3%) Strand=Plus/Minus Query 1045 AGCTTTATCTAGCTTTGCTCTCAATGAGCTATAAATAAAAATATAAAATCCACATTGATT 1104 |||| ||| ||| |||||||||||| || || ||||||||||| || ||| ||| Sbjct 9664 AGCTCAATCAAGCCTTGCTCTCAATGGGCAATGAATAAAAATATTGCATGAACACCAATT 9605 Query 1105 AC---TATACAAGACAATGAAGATGCTACTCACGTGTGTTATCTACAGTTTAATTATAGA 1161 || ||||| |||||||||||||||| || ||| || |||| | |||||| | Sbjct 9604 ACCATTATACCAGACAATGAAGATGCTGTCCAGGTGGGT--TCTAGAACCTAATTAGGAA 9547 Query 1162 TAAAAGACAAATGATGCTTTACCAACTTAAGAACTACATGACATG 1206 |||| |||||||||| | || || || ||||| |||||||||| Sbjct 9546 GAAAAAACAAATGATGTTCTAACAGCTCTAGAACCACATGACATG 9502 >seq236152 Length=34290 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 52461 AGTTAGCTACATGTTTTTGATGAGCTACATATCCAACATGTATGTTTTCAACAGAAGTTA 52520 ||| || |||||||| ||||| ||||||||||| | | ||| | | | | | Sbjct 29164 AGTGAGAAACATGTTTCTGATGTGCTACATATCCTATGTTTATACCGTGTATATTTTTCA 29105 Query 52521 ATAACATACTGATAATTGCAACAACAATCCATGTTTTTCCATGTCTTCTTGGAATTAAAA 52580 |||| | | || |||| ||||| || ||| |||||||| |||||||| || | ||||| Sbjct 29104 ATAAAAAGCAAATGATTGGAACAATAAACCAGGTTTTTCCGTGTCTTCTAGGTACTAAAA 29045 Query 52581 ATATACTTGCTTTCTGCTTAAAAATT 52606 | | ||||||||||||||| |||||| Sbjct 29044 AAACACTTGCTTTCTGCTTTAAAATT 29019 >seq314877 Length=772221 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||||||||| || || ||||| ||||| || | |||||||| Sbjct 568622 CTTTGTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAGACAGGGCCCAAATCTCCTT 568681 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | || || || || ||||| || |||||||| |||||||| | Sbjct 568682 CTTCTCTGGTGGAGAATCCTAGGCAGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGA 568741 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 568742 TTTTCACTCC 568751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359766641467439