Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq135764 298 7e-76 seq85407 262 5e-65 seq118315 138 1e-27 seq313439 123 3e-23 seq302431 109 7e-19 >seq135764 Length=27382 Score = 298 bits (330), Expect = 7e-76 Identities = 267/335 (80%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| |||||||| || || | | | | |||| | ||||| |||||||||||||||| Sbjct 5771 CAGGGCTTCGATGTCAGGTTCGATGTCGATGGTCGGAAAGCGGCGGCTGTACCTGCGCAC 5830 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| ||||||| ||||||| ||||||||| ||||||||||| || ||||||||||| Sbjct 5831 AGGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAACATCGTTGCGGCA 5890 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| |||||||||| ||||||| ||||||| ||| ||| | | |||||||||||| Sbjct 5891 CACCGGAGACCAGGTGATGAGCTTGGGGTCGGTCATGAGTGCAGTGGCGTCGTCGCTAGG 5950 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 || ||||||||||| || ||||||| |||||||||||| || | |||||| || ||||| Sbjct 5951 CGTTGGCAGGGCCTCCCGCAGGAAGGTGAAGAGCGGATGCGCACCTGCACCATTCACCTC 6010 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||||||| || | ||||| |||||||| || ||||| ||||||| ||| || Sbjct 6011 GCACTTCTCGAACAGTGTGAAGTTGGGCTCGAACCCACAGCCAGGTCGGACGTACTTGAG 6070 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||| || ||||| | |||| ||||| |||| Sbjct 6071 GGAATCCAGAATCTCTTCGTTCTTAGCGTTCTCCT 6105 Score = 210 bits (232), Expect = 3e-49 Identities = 177/216 (82%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| |||||||| ||||| ||||| | || |||| Sbjct 6368 CCTGATGCCCAAACTGGTTGCACGGGAATCCAAGCACGACCAGACCCCGGGGCCCGAGGC 6427 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || |||| |||||||||||||| ||||| |||||||| ||| | |||||||||||||| | Sbjct 6428 GCTGCTGTAGCTCGTTCATCTGGGTGTAGTCCCGGACAGTGGTGCCTCAGAGGGACGCCA 6487 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||||||||| ||| |||||| | | |||| | ||||||||| || || |||| Sbjct 6488 CATTCTCGATGAGCAACACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 6547 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGG 83606 | |||||| | |||||||||||||| || |||| Sbjct 6548 CCAGCGGGCGCACGGAGAAGGCGTACACGGA-CTGG 6582 >seq85407 Length=44733 Score = 262 bits (290), Expect = 5e-65 Identities = 342/467 (73%), Gaps = 6/467 (1%) Strand=Plus/Minus Query 83097 AGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGT 83156 ||||| ||||||||| ||| ||| | ||||| || |||| ||||||||| |||| Sbjct 33531 AGCGGGAACTGTACCTGTGCAGGGGTACACTGTCAGGGCCTACCAGGAACTTCTCAAAGT 33472 Query 83157 TCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGA 83216 ||||||| || | |||| ||||||| |||||||||| ||||| |||||| | | | Sbjct 33471 TCCAGGCAACATTGTTGTGGCACACAGGAGACCAGGAGATGAGTGTGGGGTCA-TGA-GT 33414 Query 83217 GCGTGCTCATGTCGTCGCTAGG-CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGA 83275 || | ||| | || ||| || ||||| ||||| | ||||||| ||||||| || Sbjct 33413 GCATTGGCAT--CATCCACAGGACGTTGGCAGTGCCTCCCACAGGAAGGTGAAGAGCAGA 33356 Query 83276 TGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCG 83335 || || | |||||| || || || ||||||||||| || | ||||| | ||| || || Sbjct 33355 TGCGCACCTGCACCATTCAC-TCACACTTCTCGAACAGTGTGAAGTTGGACTCAAACCCA 33297 Query 83336 TTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 || || | || | ||| |||||| || ||||| |||||| || ||| ||||| Sbjct 33296 CAGCCGGGCTGCACATACTTGAGGGAATTCAGAATCTCTTCATTCTTGGTGTTCTCCTGA 33237 Query 83396 TGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGC 83455 || || |||||||| ||| || |||||||| ||||| | ||| | || |||||| || Sbjct 33236 TGCCCAAACTGGTTGTACGCAAATCCAAGCACGACCAGACGCCGGGGCCCGAGGCGCTGC 33177 Query 83456 TGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTC 83515 || ||||| |||||||| ||||| ||||||||| || | ||||||||| | | || | | Sbjct 33176 TGTAGCTCCTTCATCTGTGTGTAGTCCCGGACCATGGTGCCTCAGAGGAATGTCACATGC 33117 Query 83516 TCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTC 83562 ||||||||||| | | || ||| | | |||| | |||||||| || Sbjct 33116 TCGATGAGCAACAACTTGCTCCGCAGGGAGCCCAGACTCACAGGCTC 33070 >seq118315 Length=53091 Score = 138 bits (152), Expect = 1e-27 Identities = 194/267 (73%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| || |||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 12909 GCAGCTCCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCGTCGCGCCTGC 12851 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| | ||| | ||||||| Sbjct 12850 TGGTGCACCTGTTCCCCGAGCTCTTCACGCACGAGAACCTGCGGAAGCAGTACAACTGCA 12791 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | ||| | |||| ||||| Sbjct 12790 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCGCGCGCATCCGCCTCATCCGCCACTAC 12732 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| ||||| |||| ||| ||||| |||||||||| ||||| ||| Sbjct 12731 GTGCAGCTGCTGTACCCCCGGGCCAAGAACGACCGCGTGTGGACGCTGGAGTTCGTGGGC 12672 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGC 50674 |||||||||||||||||||||||| Sbjct 12671 AAGCTGGACGAGCGCTGCCGGCGCCGC 12645 Score = 89.7 bits (98), Expect = 6e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 49919 TCCTCTCCCGGGGAGCTGGCGGTGCTCCTACTGCACAAGGTCTTCCAGGAGCTCTTTGAC 49978 ||||| || |||||| | || || |||| |||||| | |||||| ||||||||| ||| Sbjct 13370 TCCTCGCCGGGGGAGTTCGCCGTCTTCCTGCTGCACCGGCTCTTCCCGGAGCTCTTCGAC 13311 Query 49979 GCGCGCCAGCTGCGCC-GCTGCTACAGCTGCTACGGCGACGGGCGCACGCATTGTCTGGA 50037 ||| ||||| || || | |||||||||||||| ||||| ||| ||| ||||| Sbjct 13310 CACCGCAAGCTGGGCGAGCAG-TACAGCTGCTACGGGGACGGCGGCAAGCAGGAGCTGGA 13252 Query 50038 CCCTGCGCGCCTGCAACTGATCCGGCACTGCGTGGCGCTTTGCTTCCC 50085 ||| ||| ||||| | ||||| ||| | || | | | |||||| Sbjct 13251 CCCGCAGCGGCTGCAGGTCATCCGCAACTACACGGAGATCTACTTCCC 13204 >seq313439 Length=491395 Score = 123 bits (136), Expect = 3e-23 Identities = 237/343 (69%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCG 83115 ||| ||| || |||||| ||||| | | | ||| || || | ||||||| | || Sbjct 137471 GAGGAGGCGCTTGATGTCAGGCTCGATGCTGATGGTGGGGAAGGTGCGGCTGTAGCGCCG 137412 Query 83116 CACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 | |||| || || | ||||| | |||||||||||||||||||||||| || ||| Sbjct 137411 GAAGGGCTCCCCCTCGGGGCCCACGAGGAACTTCTCGAAGTTCCAGGCCACATCCGAGCG 137352 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 || ||| ||| |||| |||| || ||||||| ||| ||| | | |||||| || Sbjct 137351 GCGCACCGGACTCCAGATGATGAACTTGGGGTCGGTCATGAGGGAATGCGGGTCGTC-CT 137293 Query 83236 AGGCGCCGGCAGGGCCTCTCGT--AGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTT 83292 || | || | || | || | ||| ||||||||| || || | | ||| ||||| Sbjct 137292 GGGGGTAGG-GGAGCTTGTCCTTCAGGTAGGCGAAGACGGGGTGCTCATTCTGC-CCGTT 137235 Query 83293 GACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTG 83352 || |||||||||| | ||| | ||| | |||| | ||||| ||| || || |||| Sbjct 137234 CACGTCGCACTTCTGAAGGAGGGTGAAGGTGGGCTGGTAGCCGCCCCCTGGGCGAACGTA 137175 Query 83353 CTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 ||| ||| | || |||||| ||||||| ||| |||||| Sbjct 137174 CTTGAGGCTATTCAGGATCTCCTCATTCTGACAGTTCTCCTGG 137132 >seq302431 Length=567579 Score = 109 bits (120), Expect = 7e-19 Identities = 267/392 (68%), Gaps = 16/392 (4%) Strand=Plus/Plus Query 83135 CCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCA 83194 || || | |||||||||||| |||| |||||| || |||| ||| ||| |||| Sbjct 301863 CCGACGAGGAACTTCTCGAA-TTCCGGGCCACATCCGAGCGGTGCACCGGACTCCAGAGG 301921 Query 83195 ATGAGCTGGGGGTCGCTCACGAGCGTGCT-CATGTCGTCGCTAGGCGCCGGCAGGGCCTC 83253 |||| || ||||||| ||| ||| | ||| | |||||| || || | || | || | Sbjct 301922 ATGAACTTGGGGTCGGTCATGAGGG-GCTGCGGGTCGTC-CTGGGGGTAGGG-GAGCTTG 301978 Query 83254 TCGT--AGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTCGCACTTCTCGA 83309 || | ||| ||||||||| || || || || || || || || || ||||||| || Sbjct 301979 TCCTTCAGGGAGGCGAAGACGGGGTGCTTGTTCT-GCCCC-TTCACATCACACTTCTGGA 302036 Query 83310 AGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGA 83369 || | ||| | |||| | | | | ||| || ||| | | ||| || | || || Sbjct 302037 GAAGGGTGAAGATGGGCTGGTACCTGACCCCCGGGCGGGCATACTTGAGACTATTCAGGA 302096 Query 83370 TCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTA 83429 |||| ||||||| ||| ||||| || || || ||||| | ||||| || || || | Sbjct 302097 TCTCCTCATTCTGACAGTTCTCCTGATGTCCAAATTGGTTGCCAGGGAAGCCGAGGACCA 302156 Query 83430 CCAGCC-CCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACC 83488 |||| | |||| | | ||| | ||||||| || | ||| ||| | |||||| Sbjct 302157 CCAGGCGCCCGGGG----AAGCGGCAGAGCAGCTCATTGAGCTGCGTGAAGTCCCGGGTG 302212 Query 83489 GTGCTACCTCAGAGGGACGCTACGTTCTCGAT 83520 || | |||| ||| || || ||||||||||| Sbjct 302213 GTCGTGCCTCCGAGCGAAGCCACGTTCTCGAT 302244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606230805197560