Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq130668 127 2e-24 seq316040 122 7e-23 seq305757 116 3e-21 seq100879 113 4e-20 seq314340 107 2e-18 seq169768 105 6e-18 seq302728 100 2e-16 seq306880 96.9 3e-15 seq314311 93.3 4e-14 seq130551 87.8 2e-12 seq309042 82.4 6e-11 >seq130668 Length=27386 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||||| ||| | ||||||| |||| |||||||| || || ||||| ||||| | | Sbjct 9588 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9529 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||||||||||||| ||| | || || ||||||||||| || Sbjct 9528 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9469 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||||| || || | | | || || | |||||| Sbjct 9468 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9409 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| |||||||| || || | || || || || || |||||| Sbjct 9408 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCATT 9361 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||||| ||| | ||||||| |||| |||||||| || || ||||| ||||| | | Sbjct 9816 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9757 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||||||||||||| ||| | || || ||||||||||| || Sbjct 9756 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9697 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||||| || || | | | || || | |||||| Sbjct 9696 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9637 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || | || || || || || ||||| Sbjct 9636 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9590 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | |||||| | | || Sbjct 10029 AGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 9970 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | || || ||||||||||| || | |||||||||||| Sbjct 9969 TCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 9910 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || || | |||||| |||| ||| |||||| Sbjct 9909 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 9850 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || | || || || || || ||||| Sbjct 9849 TTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9818 >seq316040 Length=1005281 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 910480 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAA 910421 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||||||||||||| | || || | ||||||||| || Sbjct 910420 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGA 910361 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | ||| || |||| ||||||| | Sbjct 910360 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACT 910301 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | || || | || || ||||| Sbjct 910300 TCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCATGAAGATCTGCAT 910254 >seq305757 Length=1147529 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| |||| || ||||| || || ||||| || || | Sbjct 1142244 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAA 1142185 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| ||| | || || ||||||||||| || Sbjct 1142184 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1142125 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| ||||| | ||| ||||||| |||||| Sbjct 1142124 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACC 1142065 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| |||||||||||||| | ||||| || || || |||||||||| Sbjct 1142064 TCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATTTTGA 1142013 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || |||||||| || || | || || || | || Sbjct 1142457 AGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 1142398 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| |||| || ||||||||||| || | |||||| || || Sbjct 1142397 TCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 1142338 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | | ||||||| ||||| ||| | ||| |||||| Sbjct 1142337 TGGATCTTAGCCTTCACGTTTTCAATGGTATCACTAGGCTCAACTTCTAGGGTGATGGTC 1142278 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || ||||| || ||||| Sbjct 1142277 TTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 >seq100879 Length=438 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || |||||||| || || | || || || | || Sbjct 223 AGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCCATCT 282 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| || | |||||| || || Sbjct 283 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 342 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| ||||||| |||||| ||| | ||| |||||| Sbjct 343 TGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACTTCTAGGGTGATGGTC 402 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || ||||| || ||||| Sbjct 403 TTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 434 >seq314340 Length=1169179 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 629759 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAA 629700 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||||||||||||| | || || | ||||||||| || Sbjct 629699 AGAGTGCAGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGG 629640 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| | ||| || | | | || |||| |||||| | Sbjct 629639 ATGCCCTCCTTGTCTTGGATTTCAGCTTTGACATTCTCTATGGTGTCACTGGGCTCAACT 629580 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | || || || || || ||||| Sbjct 629579 TCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 629533 >seq169768 Length=302843 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| || ||||| || || ||||| || || | || || | | || Sbjct 108915 GAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATC 108974 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| |||| || ||||||||||| | || | |||||| || || Sbjct 108975 TTCCAGCTGCTTGCCTGCAGAAATGAGCCTCTGCTGGTCGAGAGGGATGCCTTCTTTATC 109034 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||||| | | | ||||||| |||||| | | ||| ||||| Sbjct 109035 ATGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGCTCAACCTGTAGGGTGATGGT 109094 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| ||| | ||||| || || || |||||||||| Sbjct 109095 CTTGCTGGTCAGGGTTTTCACGAAGATCTGCATTTTGA 109132 >seq302728 Length=1132070 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||||| |||| |||||||| || || ||||| || || | Sbjct 600825 CCACCTCTCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTATTCTGAA 600884 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||||||||| ||| | || || | ||||||||| || Sbjct 600885 AGAGTGCGACCATCCTCCAGCTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGTGGG 600944 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | ||| || |||| |||||| | Sbjct 600945 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACT 601004 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGC 21173 || | ||| || |||||||| || | || || || || || ||| Sbjct 601005 TCAAGGGTGATTGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGC 601049 >seq306880 Length=403723 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 20972 ATGCAAAGTGGACTCCTTTTGA-ATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCT 21030 ||||| || ||||| || | | ||||| || || | || || ||| | || ||||||| Sbjct 157907 ATGCAGGGTTGACTCTTTCTAAGATGTTGTAATCAGAAAGAGTGTGGTCATCTTCCAGCT 157966 Query 21031 GTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCT 21090 | ||| | ||| |||| || ||||||||||| |||| || ||| || || ||||| Sbjct 157967 GCTTGTCTGCACAAATGAGCCTCTGCTGGTCAGGAGGCATGCTTTCTTTATCCTGGATCT 158026 Query 21091 TTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGG 21150 | ||||| | || ||||||| |||| | | || | ||| ||||||||||| | Sbjct 158027 TGACCTTCACATTCTTGATGGTATCACTGGGCCCAGCCTCTAGGGTGATGGTCTTGCCAG 158086 Query 21151 TTAACGTTTTGACAAATATTTGCATTTTGA 21180 | | ||||| | || || |||||||||| Sbjct 158087 TCAGGGTTTTCATGAAGATCTGCATTTTGA 158116 >seq314311 Length=485322 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/237 (69%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| ||||||| | || ||| ||| || || ||||| ||||| | Sbjct 408777 CCGCCTCGCAGGTACAGCACCAGGTACAGGGTG--CTCTTTCTGGATGTTGTAGTCTGAG 408834 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || ||| | ||||||||||||||||||||| | || || ||||||||| || Sbjct 408835 AGAGTATGGCCATCCTCCAGCTGTTTGCCCGCAAATATTAGATGCTGCTGGTCAGGTGGG 408894 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || | ||| || | ||| || |||| |||||| Sbjct 408895 ATGCCCTCCTTGTCTTGGATTTTATTTTTGACATTCTCGATGGTGTCACTGGGCTCAACC 408954 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 || | ||| || ||||||| | | || || || || | ||||| |||| |||| Sbjct 408955 TCAAGGGTGATAATCTTGCCCATGAGGGTCTTCACGAAGACCTGCATCTTTGCATCT 409011 >seq130551 Length=136198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||| || || ||||| ||||| | Sbjct 89907 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAA 89848 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || ||| | |||||| |||||||||||||| | | || | ||||||||| || Sbjct 89847 AGAGTGTGGCCATCCTCC-GCTGTTTGCCCGCAAATACCAGACGCTGCTGGTCAGGTGGG 89789 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||| || ||| || | || || |||| |||||| | Sbjct 89788 ATACCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTTGATGGTGTCACTGGGCTCAACT 89729 Query 21129 TCCACG----GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | | || || |||||| | || | || || || || || ||||| Sbjct 89728 TCAAGGAATCGTGATTGTCTTGTCCGTGAGGGTCTTCACGAAGATCTGCAT 89678 >seq309042 Length=1952097 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 || ||||| | ||||||||||||||| ||||| | ||| | || | || ||||| || Sbjct 293258 TGAAAAGTAGGCTCCTTTTGAATGTTGTAGTCAGACAGAATATGTCCATCTTCCAGTTGC 293199 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| |||| ||||| ||||| || || | ||||||||||| ||||||| Sbjct 293198 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTT 293139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420523929644324