Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq303727 109 4e-19 seq126465 104 2e-17 seq306752 96.9 3e-15 seq131556 93.3 3e-14 seq92613 87.8 1e-12 seq308087 84.2 2e-11 seq315406 82.4 6e-11 >seq303727 Length=1188818 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||||| ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 949281 AAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 949340 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 949341 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 949400 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 949401 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 949460 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||||||||||||||| | ||||| Sbjct 949461 AACATTCAAAAGGAATCTACTCTTCATCTTGTGTT 949495 >seq126465 Length=199800 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||||| ||||| | ||||| || ||||| ||| | | |||||| Sbjct 38869 AAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCAAGGTTGAACCC 38928 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || || ||||| ||||| | || ||| Sbjct 38929 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 38988 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| ||| || | || ||| Sbjct 38989 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTCTGTCTGACTAC 39048 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 || ||||||||||||||||||||||| | ||||| Sbjct 39049 AACATTCAAAAGGAATCTACTCTTCATCTTGTGTT 39083 >seq306752 Length=244776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || ||||| || ||||| ||||| | ||||| || ||||| || ||| |||||| Sbjct 146965 AAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 147024 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | || | ||| || || ||||| ||||| | || || Sbjct 147025 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 147084 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || |||||||| |||||||| ||||| ||| |||||||| | ||| || | || ||| Sbjct 147085 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTCTGTCTGACTAC 147144 Query 25212 AATATTCAAAAGGAATCTACTCTTCA 25237 || ||||||||| ||||||||||||| Sbjct 147145 AACATTCAAAAGAAATCTACTCTTCA 147170 >seq131556 Length=230148 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25036 TGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAG 25095 |||| || ||||| ||||| | || || || ||||| || ||| |||| ||| Sbjct 29212 TGCAGATTTTCATGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTCAACCTCCAG 29271 Query 25096 AGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAAC 25155 | || || | || | ||| || || ||||| ||||| | || ||||| | Sbjct 29272 ACACAGTAGAAAATGTAAAGACCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAGC 29331 Query 25156 AAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATA 25215 ||||||| |||||||| ||||| ||| |||||||| ||| || | || ||||| | Sbjct 29332 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTCTGTCTGACTACAACA 29391 Query 25216 TTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||| ||||||||||| | ||||| Sbjct 29392 TTCAAAAGGAGTCTACTCTTCATGTTGTGTT 29422 >seq92613 Length=686304 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 ||||| |||||||| |||||||| ||||| || |||||||| | ||| || | || Sbjct 590028 GATCAGCAAAGACTGATCTTTGCTGGCAAGAAACTGGAAGATGGACATACTCTGTCTGAC 590087 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||| ||||||||||| ||||||||||| | ||||| Sbjct 590088 TACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 590125 >seq308087 Length=671593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||| |||||||| |||||||| ||||| ||| ||||| Sbjct 466464 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAA 466405 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| | ||| || | || ||||| ||||| ||| | ||||||||||| | ||||| Sbjct 466404 GATGGACATACTCTGTCTGACTACAACATTCACAAGAAGTCTACTCTTCATCTTGTGTT 466346 >seq315406 Length=587182 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25037 GCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGA 25096 ||| || ||| | ||||| | | ||| || ||||| || ||| | |||||| | || Sbjct 211641 GCAGATTTTCGTGAAAACCCTTATGGGGAAGACCATCACTCTCGAGGCTGAACCCTCGGA 211700 Query 25097 GACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACA 25156 || | | || | ||| || || ||||| ||| | | || |||| | || Sbjct 211701 TACAATAGAAAATGTAAAGGCCAAGATACAGGATAAGGAAAGAATTCCTCCAGATTAGCA 211760 Query 25157 AAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATAT 25216 |||||| |||||||| ||||| ||| |||||||| ||| || | || ||||| || Sbjct 211761 AAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTCTGTCTGACTACAACAT 211820 Query 25217 TCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||| |||| ||||||||||| | ||||| Sbjct 211821 TCAACAGGAGTCTACTCTTCATTTTGTGTT 211850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409108634273246