Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq306755 96.9 6e-15 >seq306755 Length=686256 Score = 96.9 bits (106), Expect = 6e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 ||||||| || | |||| ||||| | |||| |||||| | || || ||||| || || Sbjct 221615 GATAGCCGCTGCTCTGTGGTGGTACTTTGTATCTAAAGGGGTTGAGTATTTGGACACAGT 221556 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||||| || || ||||| || ||||| ||| ||| || || ||||||||||| | Sbjct 221555 GTTTTTTATCCTGAGGAAGAAGAACAATCAAGTTTCTTTCCTTCATGTATATCATCACTG 221496 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 ||| ||||| || | | ||||| || ||||| ||| | || ||||| || Sbjct 221495 TACAATGTTCACATTGTGGTGGATTGGAATTAAGTGGGTCGCAGGAGGACA 221445 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/138 (77%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||| | ||||| |||||||| || ||||||||| | || ||||| Sbjct 219594 GCATTTTTCGGAGCCCAGATGAATTCCTTTATCCACGTGATTATGTACTCATACTATGGA 219535 Query 52117 ATGGCCGCTTGTGGTCCTATG-TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 || | || | || || | ||||||| |||||| ||||||||||| || || || || Sbjct 219534 CTGACAGCCTTCGGCCCGTGGATTCAGAA-GTATCTCTGGTGGAAACGATACCTCACCAT 219476 Query 52176 AATGCAGTTGGTACAGTT 52193 ||||| ||||| |||| Sbjct 219475 GTTGCAGCTGGTA-AGTT 219459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919305652427560