Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq316040 109 6e-19 seq305118 102 9e-17 seq314340 100 3e-16 seq302728 100 3e-16 seq289401 100 3e-16 seq74267 100 3e-16 seq316492 98.7 1e-15 seq145686 98.7 1e-15 seq133091 98.7 1e-15 seq304659 89.7 6e-13 seq154164 86.0 7e-12 >seq316040 Length=1005281 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 910468 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGAGTGCGGCCA 910409 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || ||||| || ||||||||||| | || | || ||||||| Sbjct 910408 TCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTG 910349 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || |||||| ||||| || | | ||||| || | ||||| || | ||||| Sbjct 910348 TCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCAAGGGTGATT 910289 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| | ||||| ||||| Sbjct 910288 GTCTTGCCCGTGAGGGTCTTCATGAAGATCTGCAT 910254 >seq305118 Length=991007 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 196070 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 196129 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 196130 TACTAACGAGGACTGA 196145 >seq314340 Length=1169179 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| ||| || || || ||||| || | ||||| | | Sbjct 629747 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAAAGAGTGCAGCCA 629688 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || ||||| || ||||||||||| | || | || ||||||| Sbjct 629687 TCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 629628 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||||| ||||| || | | ||||| || | || || || | ||||| Sbjct 629627 TCTTGGATTTCAGCTTTGACATTCTCTATGGTGTCACTGGGCTCAACTTCAAGGGTGATT 629568 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| || ||||| ||||| Sbjct 629567 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 629533 >seq302728 Length=1132070 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | | || ||||| |||| ||| ||| || || || ||||| || | Sbjct 600825 CCACCTCTCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTATTCTGAA 600884 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || ||||| || || || ||||| || ||||||||||| | || Sbjct 600885 AGAGTGCGACCATCCTCCAGCTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGTGGG 600944 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| |||||| ||||| || | | ||||| || | || || Sbjct 600945 ATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACT 601004 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 || | ||||| || ||||| || || ||||| || ||||| ||| Sbjct 601005 TCAAGGGTGATTGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGC 601049 >seq289401 Length=346727 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 34399 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 34458 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 34459 ATACTAACGAGGA 34471 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 82655 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 82714 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 82715 ATACTAACGAGGA 82727 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 44279 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 44338 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 44339 TACTAACGAGGAT 44351 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||| || |||| ||||||| Sbjct 76340 TCTCCCCGTCGGGGAATCGAACCCCAGTCTCCCGCGTGACAGGTGGGGATACGCACCACT 76399 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 76400 ATACTAACGAGGA 76412 >seq74267 Length=310618 Score = 100 bits (110), Expect = 3e-16 Identities = 69/77 (90%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 100459 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 100518 Query 60126 TACTACCGAGG-ATTGA 60141 ||||| ||||| ||||| Sbjct 100519 TACTAACGAGGAATTGA 100535 >seq316492 Length=437314 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 419681 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 419740 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 419741 TACTAACGAGGA 419752 >seq145686 Length=4786 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 466 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 407 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 406 TACTAACGAGGA 395 >seq133091 Length=491 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 121 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 180 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 181 TACTAACGAGGA 192 >seq304659 Length=206794 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 83712 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 83771 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 83772 TACTAACGAGGA 83783 >seq154164 Length=608 Score = 86.0 bits (94), Expect = 7e-12 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| | || Sbjct 328 GGGAATCGAACCC-GGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACAAG 270 Query 60136 GA 60137 || Sbjct 269 GA 268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569407467440920