Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq303727 107 3e-18 seq131556 107 3e-18 seq126465 107 3e-18 seq308087 98.7 1e-15 seq71722 93.3 6e-14 seq305640 91.5 2e-13 seq308817 89.7 8e-13 seq306752 89.7 8e-13 seq308646 87.8 3e-12 seq92613 86.0 9e-12 >seq303727 Length=1188818 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||||||||| ||| || || || || || || Sbjct 949510 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTCAGA 949452 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 949451 CAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 949392 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 949391 AATTCCTTCCTTATCCTG 949374 >seq131556 Length=230148 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 29437 CCACCACGAAGTCTCAACACAACATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 29379 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 29378 CAGAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 29319 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| |||||||| Sbjct 29318 AATTCCTTCCTTATCTTG 29301 >seq126465 Length=199800 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||||||||| ||| || || || || || || Sbjct 39098 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGA-ATGTTGTAGTCAGA 39040 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 39039 CAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 38980 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 38979 AATTCCTTCCTTATCCTG 38962 >seq308087 Length=671593 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| ||||| || || || || || || Sbjct 466331 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTTCTTGTGA-ATGTTGTAGTCAGA 466389 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 466390 CAGAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 466449 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 466450 AATTCCTTCCTTATCCTG 466467 >seq71722 Length=216781 Score = 93.3 bits (102), Expect = 6e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 |||||| ||||| | ||| | |||||| || ||| || || ||||| | | ||| | | Sbjct 129682 AAGTCTCAATACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTATAGTTATATAGAATAC 129624 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 |||| || | ||| || |||||||| |||| |||||||||||| ||||||||||||| Sbjct 129623 GTTTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 129564 Query 146178 CTTTATCTTG 146187 | ||||| || Sbjct 129563 CCTTATCCTG 129554 >seq305640 Length=1232121 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || ||||||| |||| ||| ||| | |||| || ||| |||| | |||| Sbjct 932978 TTCCTTCTGGGTGTTATGGAAGAGTAGTTCCACGTTCTGGCTTGGCTGTAAAACACTTTA 933037 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||||| || || || | | Sbjct 933038 TAGATGTAGGAGCTGGTGTCATAGAAGAAGATTATAGAGGAAATGTTGGTGTTGTACTGT 933097 Query 10549 TTAAT 10553 ||||| Sbjct 933098 TTAAT 933102 >seq308817 Length=568824 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || || || || || || Sbjct 129900 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 129958 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || | ||| || ||||||||||| |||||||||||| ||||| Sbjct 129959 CAATGTACATCCATCTTCCAGTTGCTTGCCAGCAAAAATTGGTCTTTGCTGATCAGGAGG 130018 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 130019 AATTCCTTCCTTATCCTG 130036 >seq306752 Length=244776 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGA 146109 ||||| | | |||| | || | ||| | |||||||| |||| || || || || || || Sbjct 147194 CCACCACGACGTCTCAGCACAAGATGAAGAGTAGATTTCTTTTGA-ATGTTGTAGTCAGA 147136 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| | ||| || | ||| || |||||||| |||| ||||||||| || ||||| Sbjct 147135 CAGAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 147076 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 147075 AATTCCTTCCTTATCCTG 147058 >seq308646 Length=105333 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || ||||||| |||| ||||||| | |||| || ||| ||| | |||| Sbjct 84345 TTCCTTCTGGGTGTTATGGAAGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAACACTTTA 84404 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||||| || || | | | Sbjct 84405 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTGCTGT 84464 Query 10549 TTAATCATTCTAATGAAGATTTT 10571 ||||| | || ||||| ||| Sbjct 84465 TTAATTTTGGCAAAGAAGAGTTT 84487 >seq92613 Length=686304 Score = 86.0 bits (94), Expect = 9e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 || ||||| | |||||| || || | ||| | |||||| || ||| || || || || || Sbjct 590143 GTACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTC 590085 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || ||||| | ||| || | || || |||||||| |||| |||||||||||| || Sbjct 590084 AGACAGAGTATGTCCATCTTCCAGTTTCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGG 590025 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||| ||| ||| ||||| || Sbjct 590024 AGGAGTTCTTTCCTTATCCTG 590004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740392538458880