Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq301619 306 3e-78 seq301777 208 7e-49 seq117952 205 9e-48 seq289273 122 8e-23 seq96983 116 3e-21 seq303989 98.7 9e-16 >seq301619 Length=432943 Score = 306 bits (338), Expect = 3e-78 Identities = 634/936 (68%), Gaps = 22/936 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | || ||| ||| || || | ||||||| ||| | ||| Sbjct 188341 TTTAGAAGTCAGCATCCAAAGTAAAAGAATTCTCCGTTGGACTTGACATCACTCATATTC 188400 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | |||||||| | |||||||| |||||||| || || ||||||| | |||| |||| | Sbjct 188401 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTATTAT 188460 Query 16005 CCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTTATCGCATCCCAATTCCAA 16059 |||| || ||||| ||||||| ||||| || | | | | |||| ||||| Sbjct 188461 CCATCAAGTCAAATGGATTTTCTACTTTGAA-AACCTTGCTAA----AACCCAGTTCCAG 188515 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || | ||| || |||||||| || || || || ||||||||| || ||||| || || Sbjct 188516 CATAAGTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAAT 188575 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | || ||||| | |||||||| | || | | |||||| |||| || | ||||| Sbjct 188576 GAGCTTCACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGAT 188635 Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTTA---ATAAG-TGTTTAAACATTATAC 16235 ||| ||| ||||| | || | | || ||||| || || ||||| || || | | Sbjct 188636 TATTTCTTTTACT-CTCTGCT---CCGATGGTTTGTGTATCAGGTGTTTGAATATCAGGC 188691 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 | ||||| ||||| || || || || || || || || | || || | |||||| || | Sbjct 188692 AGGCAAAGTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGC 188751 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | ||||| ||||||| ||| || | ||| ||||| | | ||| |||||||||||| | | Sbjct 188752 CAGGCATCAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGA 188811 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttc 16413 | ||||| ||||| ||||| || || | || || || || || || ||| | | | Sbjct 188812 TGCCTTCCACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCC--CC 188869 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||| ||||||| ||| || | || ||||| ||| |||| || ||||| Sbjct 188870 AGTCCAACGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATT 188929 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || | | | | |||||||| ||| ||| ||||| || || || | ||| ||||| Sbjct 188930 GAAGAGAAATTCCCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACAT 188989 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| ||||| || || ||||| || || || || ||||| || || | ||||| | | Sbjct 188990 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAAC 189049 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| | ||| | || | |||||||| || ||||| ||||| || ||||| Sbjct 189050 TTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGC 189109 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 ||| || | || | | ||||||| | | || | | || | ||||| Sbjct 189110 AAAGAAAGTCAGAACACGCGATATAAAATATCTCTCCACAGGTTTCAGGGATTCCCAGTG 189169 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | ||||| | | ||| |||||||| | |||||||| || || |||| || | Sbjct 189170 CCGGAGGTCTTTGGTAAGATCAACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCGT 189229 Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 ||||| | ||| ||||| | ||| | |||||||| Sbjct 189230 GTACATCTGCCAGATGTCATGGTACTCGATAGGAAA 189265 >seq301777 Length=185553 Score = 208 bits (230), Expect = 7e-49 Identities = 509/762 (67%), Gaps = 26/762 (3%) Strand=Plus/Minus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| ||| | ||||||| ||| |||| | |||||| | | |||||||| ||||| Sbjct 170373 ATTCTCTGTTTGACTTGACATCACTCGCATTCTCTGATATCCGCCTACTCTCTTCTCAAA 170314 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT-----TT 16027 ||| || || ||||||| | ||||||||| ||| | || ||||| ||| ||| || Sbjct 170313 GAAGTTAGTCTTTCCTTTCAGTGAAATATTCTCCGTGAAGTCAAATGGACTTTCTACTTT 170254 Query 16028 GAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATA 16087 ||| | || | |||| | ||||| | | ||| | ||||||| || || Sbjct 170253 GAAAACC----TTGCTAAAATCC-AGTTCCAGTATAAGTCTGTTGCCCACAAACTCGATG 170199 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147 || | ||||||||| || ||||| || | | || ||||| | || | || | Sbjct 170198 TATGGCTTCATTAAAATGCAATTCATCCCAGTGAGCTTCACAGGCAGGGCCTAGGTGAGG 170139 Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATT-TAACGG 16206 || | | |||||| |||| || | |||||||| ||| ||||| | || | | |||| Sbjct 170138 AACTCCTGTTCTATCCTAACAGCATTGATGATTATTTCTTTTACT-CTCTGCTGTGACGG 170080 Query 16207 AGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCT 16266 || || | |||||| || || | || ||||| ||||| || || | || || || Sbjct 170079 TTTGTGTATCAGGTGTTTGAATATCAGGCAGGCAAAGTCACAGTGTAAACTCTCATCTCT 170020 Query 16267 ACTTATTAACTCGTTT----GAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCC 16322 || || | | ||| ||| |||| || || ||||| | |||| |||| || | || Sbjct 170019 GCTAATAAGTTAGTTCACTGGAACATGTGAGGCCAGGCATCATTCCTTGTTTCTTGAGCC 169960 Query 16323 AAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCA 16382 | ||||| |||| |||||||||||||| || ||| | ||||| ||||| || || | Sbjct 169959 AGAATATCAATACAAAAGAACCAGAAAAGAAGATGCCTCCCACTGCAGCAAAGGCTACAA 169900 Query 16383 ATCGCTCACC-GTACGT--TCTAtttttactttctatccattttttagcccaatttgctt 16439 |||| || || || || || | | | ||||| | |||||| |||| | Sbjct 169899 CATGCTCTCCATTAAGTAGCCTCCTTGTCC--TGAATCCAATGCAAGGCCCAACTTGCCT 169842 Query 16440 tttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTAT 16499 | | ||| |||||| ||| |||| || || || | |||| || |||||| | Sbjct 169841 TCTTTTTGACACAGGGCATCGTCTCAATGGCGTTGA--TGATAAATTCCCTCTTTGGAGT 169784 Query 16500 CTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTA 16559 || ||| ||||| || || || | ||| ||||||| ||||| || || ||||| || | Sbjct 169783 CTTTAATGTAAGTGTCAATAAGGAGACTGCACATTTCAGAATGTATGTTTTCCATGGCAA 169724 Query 16560 TCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTG 16619 | || || ||||| || || ||||| | | ||| ||||| | ||| | || Sbjct 169723 TTTGGAAGCCATAGAAACAGTGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCA 169664 Query 16620 CTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACG 16661 | |||||||| || ||||| ||||| | ||||| ||||| Sbjct 169663 CCAAGTTTTCATTTACTATGCCATC---ATTTGCAACAAACG 169625 >seq117952 Length=1479372 Score = 205 bits (226), Expect = 9e-48 Identities = 347/501 (69%), Gaps = 10/501 (2%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | || ||| ||| | | || | ||||||| ||| |||| Sbjct 1359784 TTTAGAAGTCAGCATCCAAAGTAAAAGAATTCTTTGTTGGACTTGACATCACTCCCATTC 1359843 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||||| | |||||||| |||||||| ||||| | |||||| | ||||||||| | Sbjct 1359844 TCTGATATTTGCCTACTCTCTTCTCAAAGAAGTTTGTCTCTCCTTCCAGTGAAATATTCT 1359903 Query 16005 CCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTTATCGCATCCCAATTCCAA 16059 |||| || ||||| ||||||| ||||| || | | | | |||| ||||| Sbjct 1359904 CCATGAAGTCAAATGGATTTTCTACTTTGAA-AACCTTGCTAA----AACCCAGTTCCAG 1359958 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || | |||||| |||||||| || || || || |||||||| || ||||| || || Sbjct 1359959 CATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAATTCATCCCAAT 1360018 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | || ||||| | || || || || | | |||||| | || || | ||||| Sbjct 1360019 GAGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTTCTATCCTGACAGCATTGATGAT 1360078 Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGC 16239 ||| ||| ||||| | || || || | | |||||| ||||| | || || Sbjct 1360079 TATTTCTTTTACTCTTTGCTCCAATGGTTTGTGTGTCAGGTGTTTGAACATCAGGCAGGC 1360138 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||| ||||| || || || || | || | || | || | |||||||| ||||| || Sbjct 1360139 AAAGTCACAGTGTAAACCCTCAACTCTGTTAATAAGTTCACTGGAAAATGTGAGACCAGG 1360198 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| |||||| |||| || | ||| ||||| | ||||| |||||||||||||| || || Sbjct 1360199 CATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCC 1360258 Query 16360 TTCAACTGCGGCAAATGCAAC 16380 ||| | ||| ||||| || || Sbjct 1360259 TTCCATTGCAGCAAAGGCTAC 1360279 >seq289273 Length=322959 Score = 122 bits (134), Expect = 8e-23 Identities = 244/360 (68%), Gaps = 5/360 (1%) Strand=Plus/Plus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| ||| |||| | ||||||| | |||||||| ||||| Sbjct 72080 ATTCTCTGTTGGACTTGACATCACTCCCATTCTCTGATATTAGCCTACTCTCTTCTCAAA 72139 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032 ||| || || |||||||| | ||||||||| |||||||| ||||| ||||||| | | Sbjct 72140 GAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT----A 72195 Query 16033 ATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTG 16092 | | || | | ||| ||||| || | |||||| ||||||| || || || || Sbjct 72196 CTCTGACTTTGCTAAAACCAGTTCCAGCATAAGTCTATCAACCACAAACTCAATGTATTG 72255 Query 16093 TTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtt 16152 ||| ||||| || ||||| || || | || || | | || || || | ||| || Sbjct 72256 CTTC-TTAAAGTGCAATTCATCCCAATGAGCTTCACCAGCAAGGCCTCAGTGAGAAACTT 72314 Query 16153 tttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTT 16212 | |||||| |||| || | ||||| ||| ||||| | | | || || Sbjct 72315 CTGTTCTATCCTAACTGCACTGACAATTATTTCTTTTACTCTGTGCTCTGATGGCTTGTG 72374 Query 16213 TAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTAT 16272 | | |||||||||||| | || ||||||||| || || || || || || || || Sbjct 72375 TGCCAGGTGTTTAAACATCAGGCAGATAAAATCACAGTGTAAACCCTCATCTCTGCTAAT 72434 >seq96983 Length=126056 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | ||| ||||||||| | | | || |||||||| | Sbjct 43121 TTTAAAAATCTGCATCCAAGGTAAAGACATTATCTGTGGTTTCTGTCATAACTGCAAAAC 43062 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 43061 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 43002 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 43001 CCATAAAATCAAAGGGATTTTCTG 42978 >seq303989 Length=535067 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 320198 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 320139 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 320138 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 320079 Query 16379 AC 16380 || Sbjct 320078 AC 320077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460562575515400