Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq130668 134 1e-26 seq316040 109 4e-19 seq311794 102 6e-17 seq302728 102 6e-17 seq314340 100 2e-16 seq314311 84.2 2e-11 seq304518 84.2 2e-11 seq305757 82.4 6e-11 seq100879 82.4 6e-11 >seq130668 Length=27386 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | | |||| |||||| ||| ||| ||||| ||||||||||| | Sbjct 9816 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9757 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| ||||| ||||| ||||| || |||| || ||| ||||| ||||| Sbjct 9756 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9697 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || ||| ||| || | | | | |||| | ||| ||| Sbjct 9696 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9637 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 9636 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9590 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | | |||| |||||| ||| ||| ||||| ||||||||||| | Sbjct 9588 CCCCCTCTCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9529 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| ||||| ||||| ||||| || |||| || ||| ||||| ||||| Sbjct 9528 AGGGTGCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9469 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || ||| ||| || | | | | |||| | ||| ||| Sbjct 9468 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9409 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 9408 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9362 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | | ||||||||||| ||| ||| ||||| ||||||||||| | Sbjct 10044 CCCCCCCTCAAACGCAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9985 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| ||||| ||||| || |||| || ||| ||||| ||||| Sbjct 9984 AGGGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 9925 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || ||| ||| || | | | | |||| | ||| ||| Sbjct 9924 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACC 9865 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || ||||| |||||||| ||||| ||||| Sbjct 9864 TCCAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9818 >seq316040 Length=1005281 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||| ||||| ||||||||||| Sbjct 910481 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 910422 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| ||||| || || ||||||| ||||| ||||| || || Sbjct 910421 AAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGG 910362 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||||| || || | | | | |||| | |||||| Sbjct 910361 AATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 910302 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||||||||| || ||||||| ||||| ||||| Sbjct 910301 TTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCATGAAGATCTGCAT 910254 >seq311794 Length=553708 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || || ||||| |||||| ||| | ||| || | || ||| Sbjct 171117 ACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGAAGTTATACAGAGTACGTCCATCTTCC 171176 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| | ||| || ||||||| ||| ||||| ||||| | || |||||||| Sbjct 171177 AACTGTTTGCTGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 171236 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || | ||| ||||||| ||| || |||| | Sbjct 171237 ATCTTTGCCTTGACATTCTCAATGGCGTTGCTGGGCTCGACCTCCAGGGTGATGGTCTGG 171296 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||||||||| Sbjct 171297 CCAGTCAGGGTCTTCACAAAGATTTGCAT 171325 >seq302728 Length=1132070 Score = 102 bits (112), Expect = 6e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||||||||||| | | |||| |||||| ||| ||| || || |||||||| || Sbjct 600824 GCCACCTCTCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTGTGGATGTTGTATTCTGA 600883 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || |||| | || ||||| ||||| || || ||||||| ||||| ||||| || || Sbjct 600884 AAGAGTGCGACCATCCTCCAGCTGTTTGCCTGCAAATATCAGACGCTGCTGGTCAGGTGG 600943 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| ||||| || || | | | | |||| | ||| || Sbjct 600944 GATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCGATGGTGTCACTGGGCTCAAC 601003 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGC 45334 || | ||| || |||||||| || || |||||||| ||||| ||| Sbjct 601004 TTCAAGGGTGATTGTCTTGCCTGTGAGGGTCTTCACGAAGATCTGC 601049 >seq314340 Length=1169179 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| || | | |||| |||||| ||| ||| ||||| ||||||||||| Sbjct 629760 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 629701 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || ||||| ||||| || || ||||||| ||||| ||||| || || Sbjct 629700 AAGAGTGCAGCCATCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAGGTGG 629641 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||| |||| || || | | | | |||| | ||| || Sbjct 629640 GATGCCCTCCTTGTCTTGGATTTCAGCTTTGACATTCTCTATGGTGTCACTGGGCTCAAC 629581 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||||||||| || |||||||| ||||| ||||| Sbjct 629580 TTCAAGGGTGATTGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 629533 >seq314311 Length=485322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGT---TGGCGATCGTCG 45184 |||| || ||| ||||||| ||||| ||||||||||| || |||| ||| || Sbjct 408795 ACCAGGTACAGGGTGCTCT--TTCTGGATGTTGTAGTCTGAGAGAGTATGGCCATCCTC- 408851 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||| ||||| || || ||||| | |||| ||||| || || | ||||||||||| Sbjct 408852 --CAGCTGTTTGCCCGCAAATATTAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 408909 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||||| | || || | | | | |||| | ||| ||||| | ||| || || Sbjct 408910 TGGATTTTATTTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATAATC 408969 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 |||||| | || |||||||| |||| ||||| || Sbjct 408970 TTGCCCATGAGGGTCTTCACGAAGACCTGCATCTT 409004 >seq304518 Length=311385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/208 (69%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||| ||| ||||| ||||||||||| || |||| | || ||||| Sbjct 232775 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGGGCGGCCATCCTCCAGCCA 232716 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||| || | | ||||| | ||| |||||||| || || ||||||||||| ||||| Sbjct 232715 TTTGCCCACAAGTATCAGACACTGCTGGTCGGGTGGGACTCCCTCCTTGTCTTGGATTTT 232656 Query 45253 TTGC-TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 || || || | | | | |||| ||| ||||| | ||| | |||||||| | Sbjct 232655 AGGCTTTGACATTCTCGATGGTGTCAATGGGCTCAACCTCAAGGGTGACAGTCTTGCCTG 232596 Query 45312 TCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || |||||||| ||||| || || || Sbjct 232595 TGAGGGTCTTCACCAAGATCTGTATCTT 232568 >seq305757 Length=1147529 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| |||||||||||||| || Sbjct 1142473 GCCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 1142414 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| ||||| ||||| Sbjct 1142413 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGAGG 1142354 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || || ||| || || ||| || | | | | || | | ||| || Sbjct 1142353 GATGCCTTCTTTATCCTGGATCTTAGCCTTCACGTTTTCAATGGTATCACTAGGCTCAAC 1142294 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| ||||| ||||||||||| || ||||| Sbjct 1142293 TTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 >seq100879 Length=438 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| |||||||||||||| || Sbjct 207 GCCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGA 266 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || ||||| || || || || || || | || ||| ||||| ||||| Sbjct 267 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 326 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || || || ||| || || ||| || | | | | | || | ||| || Sbjct 327 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAAC 386 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| ||||| ||||||||||| || ||||| Sbjct 387 TTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393451642045969