Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq301619 291 8e-74 seq301777 208 7e-49 seq289273 176 4e-39 seq117952 168 6e-37 seq303989 120 3e-22 >seq301619 Length=432943 Score = 291 bits (322), Expect = 8e-74 Identities = 534/777 (69%), Gaps = 8/777 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13913 || || ||| |||| || | |||| ||| || | ||| | || || || | ||| Sbjct 188343 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC--CGTTGGACTTGACATCACTCATATTC 188400 Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 | |||||||| | ||||| || |||||||||||||| | ||||||||||| |||| | Sbjct 188401 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTATTAT 188460 Query 13974 CCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 14033 |||| || |||||||||||| | | || || || | |||| ||||| | | | Sbjct 188461 CCATCAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 188520 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 ||| || || | ||||| || ||||| ||||||| |||||||| || || || | Sbjct 188521 GTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAATGAGCT 188580 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 | ||||| | | || | || || | |||||| || || | | | || || Sbjct 188581 TCACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATTATT- 188639 Query 14154 TCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 14211 || | || | || | || || | | | || ||||| || || | || ||||| Sbjct 188640 TCTTT-TACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTGAATATCAGGCAGGCAAA 188698 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 ||||| || | |||||||||||| ||||||||||| || | |||||| | || ||||| Sbjct 188699 GTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCAGGCAT 188758 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 || ||||| ||| || | ||| ||||| | | || || || |||||| | || || || Sbjct 188759 CAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCCTTC 188818 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391 ||||||||||| |||| | ||||||||| | | || | ||||| | |||| Sbjct 188819 CACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAGTCCAACG 188878 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG 14451 ||||| || | || || || | | || ||| || ||||| ||||| || | | Sbjct 188879 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 188938 Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| | ||||| | | |||||| || |||||||| | || ||||||||||| || Sbjct 188939 TTCCCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATG 188998 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14571 |||||||||||| || || || || ||||| ||||| | ||||||| ||| || || Sbjct 188999 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTC 189058 Query 14572 TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 | | ||||| || |||| |||||||| ||||| ||||| || |||||||| || Sbjct 189059 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGAA 189115 >seq301777 Length=185553 Score = 208 bits (230), Expect = 7e-49 Identities = 498/745 (67%), Gaps = 15/745 (2%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || | |||| | |||||| | | ||||| || |||||||||||||| || ||| Sbjct 170357 GACATCACTCGCATTCTCTGATATCCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 170298 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 | |||||| ||||| ||| | || ||||||||| || | | || || || | || Sbjct 170297 TTCAGTGAAATATTCTCCGTGAAGTCAAATGGACTTTCTACTTTGAAAACCTTGCTAAAA 170238 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 | ||||| | || | ||| | | | ||||| || ||| | ||||||| ||| Sbjct 170237 TCCAGTTCCAGTATAAGTCTGTTGCCCACAAACTCGATGTATGGCTTCATTAAAATGCAA 170178 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || | || || ||||| | | ||| | || || | |||||| ||| Sbjct 170177 TTCATCCCAGTGAGCTTCACAGGCAGGGCCTAGGTGAGGAACTCCTGTTCTATCCTAACA 170118 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 14195 || | | | || || || | || | || | || || | | | || ||||| | Sbjct 170117 GCATTGATGATTATT-TCTTT-TACTCTCTGCTGTGACGGTTTGTGTATCAGGTGTTTGA 170060 Query 14196 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT---- 14251 | || | || ||||| ||||| || | | ||||||||| |||||||||| ||| Sbjct 170059 ATATCAGGCAGGCAAAGTCACAGTGTAAACTCTCATCTCTGCTAATAAGTTAGTTCACTG 170000 Query 14252 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 14311 ||| |||| | || ||||||| |||| |||| || | ||| ||||| | || || Sbjct 169999 GAACATGTGAGGCCAGGCATCATTCCTTGTTTCTTGAGCCAGAATATCAATACAAAAGAA 169940 Query 14312 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAA-ACGATGC 14370 || |||||||| || || | ||||||||||| |||| | | |||||| | | || Sbjct 169939 CCAGAAAAGAAGATGCCTCCCACTGCAGCAAAGGCTACAACATGCTCTCCATTAAGTAGC 169880 Query 14371 TTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14430 | |||| | ||||| | ||||| | || ||||| | | | ||| || Sbjct 169879 CTCCTTGTCCTGAATCCAATGCAAGGCCCAACTTGCCTTCTTTTTGACACAGGGCATCGT 169820 Query 14431 TTCAATAGCATTAA--ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATA 14488 ||||| || || | |||||| ||| ||| | ||| || |||||| || |||||| Sbjct 169819 CTCAATGGCGTTGATGATAAAT--TCCCTCTTTGGAGTCTTT--AATGTAAGTGTCAATA 169764 Query 14489 AGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACAT 14548 || | || |||||||||| |||||||||||||| || || || || ||||| ||||| Sbjct 169763 AGGAGACTGCACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAG 169704 Query 14549 CTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATA 14608 ||||||| ||| || ||| | ||||| || |||| |||||||| ||||| Sbjct 169703 TGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATG 169644 Query 14609 CCATCACTAGCTGCAAAAAATGCCA 14633 |||||| | || |||| ||| || Sbjct 169643 CCATCATTTGCAACAAACGATGGCA 169619 >seq289273 Length=322959 Score = 176 bits (194), Expect = 4e-39 Identities = 282/399 (71%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 14238 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 14297 |||||||||| || |||||||| || | | ||||| |||| |||| || | || |||| Sbjct 72671 TAATAAGTTCATTGGAAAATGTAAAGCTTCACATCAGTCCTTGTTTCTTGAGGCAGAATA 72730 Query 14298 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14357 | | || || || || ||||||| || || || ||||||||||| |||| | | || Sbjct 72731 TCGATGCAAAAGAACCAAAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACATT 72790 Query 14358 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 ||||||| | || | ||||||| ||||| | ||||| || | ||||| || | Sbjct 72791 CTCCAAAAGTAGCCTCTTTGTTCCCAATCCAACCTAAGGCCCAATCTGCCTTTTTCTTGA 72850 Query 14418 TAAAATCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT--AGTACTTGAAA 14474 | || || || | ||| | || || | || |||||| ||||| ||| ||| || Sbjct 72851 CACAAGGCAACGTCTTAATGGTGTTGAAGAGAAATTTCCTT-TCTTTGCAGT-CTT-TAA 72907 Query 14475 TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAA 14534 |||| | |||||||| | || || |||||||| | ||||| |||||| || || || | Sbjct 72908 TGTAAATGTCAATAAGGAGACTGTATATTTCAGAATATATGTGTTCCATGGCAATTTGGA 72967 Query 14535 AACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAAT 14594 | ||||| ||| | | |||||| ||| || ||| | ||||| || |||| Sbjct 72968 ATCCATAGAAATAGCAGGCTTCTATAATTTGAACTTCTTGGCTAAATCACTCTACCAAGC 73027 Query 14595 TTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 ||||||| ||||| |||||||| |||||||| || |||| Sbjct 73028 TTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 73066 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | ||||||| | ||||| || |||||||||||||| || ||| Sbjct 72096 GACATCACTCCCATTCTCTGATATTAGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 72155 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| |||||||| |||||||||||| | | ||||| | || Sbjct 72156 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT---ACTCTGACTTTGCTAAAA 72212 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || ||||| | | | |||||| | | |||||||| ||||| | ||||| ||| Sbjct 72213 CC-AGTTCCAGCATAAGTCTATCAACCACAAACTCAATGTATTGCTTC-TTAAAGTGCAA 72270 Query 14078 TTCATACCTATTAGTTTTAC 14097 ||||| || || || || || Sbjct 72271 TTCATCCCAATGAGCTTCAC 72290 Score = 102 bits (112), Expect = 8e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | ||||||| | ||||| || |||||||||||||| || ||| Sbjct 72565 GACATCACTCCCATTCTCTGATATTAGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 72506 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| ||||| |||||||| |||||||||||| Sbjct 72505 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 72470 >seq117952 Length=1479372 Score = 168 bits (186), Expect = 6e-37 Identities = 308/451 (68%), Gaps = 0/451 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | ||||||| | ||||| || ||||||||||| || | ||| Sbjct 1359828 GACATCACTCCCATTCTCTGATATTTGCCTACTCTCTTCTCAAAGAAGTTTGTCTCTCCT 1359887 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA 14017 |||||||| ||||| ||||| || |||||||||||| | | || || || | || Sbjct 1359888 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAA 1359947 Query 14018 CCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAA 14077 || ||||| | | | |||||| || | ||||| || ||||| |||||| ||| Sbjct 1359948 CCCAGTTCCAGCATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAA 1360007 Query 14078 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 14137 ||||| || || || || ||||| | | ||| || || | |||||| ||| Sbjct 1360008 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTTCTATCCTGACA 1360067 Query 14138 GCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 14197 || | | | || || | | ||| | | || | | | || ||||| || Sbjct 1360068 GCATTGATGATTATTTCTTTTACTCTTTGCTCCAATGGTTTGTGTGTCAGGTGTTTGAAC 1360127 Query 14198 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 14257 || | || ||||| ||||| || | |||||| |||| |||||||||| | |||||| Sbjct 1360128 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCAACTCTGTTAATAAGTTCACTGGAAAAT 1360187 Query 14258 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 14317 || | || ||||||| |||| |||| || | ||| ||||| | || || || || ||| Sbjct 1360188 GTGAGACCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 1360247 Query 14318 AAGAATATTCCCTCAACTGCAGCAAACGCTA 14348 ||||| || || || | ||||||||| |||| Sbjct 1360248 AAGAAGATGCCTTCCATTGCAGCAAAGGCTA 1360278 Score = 132 bits (146), Expect = 5e-26 Identities = 277/399 (69%), Gaps = 18/399 (5%) Strand=Plus/Plus Query 14397 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA-AATGTTCC 14455 |||| || | || ||||| | | || |||| || ||||| ||||| || | || |||| Sbjct 1360513 CCCAATCTGCCTTCTTTTTGACACAAGCCATCGTCTCAATGGCATTGAAGAGAAATTTCC 1360572 Query 14456 TTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 || ||||| ||| ||| || || || |||||||| | ||| |||| |||| |||| Sbjct 1360573 TT-TCTTTGCAGT-CTTTAATGTTAAGTGTCAATAAGGAGACTA--CATTCCAGAATGTA 1360628 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-T 14572 ||||||||| ||| || || || ||||| ||| | | |||||||| ||| || || | Sbjct 1360629 TGTTTTCCACAGCAATTTGGAAGCCATAGAAATAGCGAGCTTCTGTAACTTGAACTTCTT 1360688 Query 14573 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC- 14631 || | ||||| || ||| |||||||| ||||| ||||| || |||||||| || || Sbjct 1360689 GACT-AAATCACTC-CACAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCC 1360746 Query 14632 -CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCT--AA 14688 ||| ||| | ||||| | | ||| ||| | || || ||| | ||| | Sbjct 1360747 ACAACATGCGAT--ATAAAATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGGAG 1360802 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||||| |||||||| || | || ||||||||| || ||||||| |||||||| Sbjct 1360803 GTCCTTGGAAAGATCAACCTTCTCGGTTGTCCAAAAGGAGGCCTCAGCTTTCTTATACAT 1360862 Query 14749 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 ||| || || | ||| |||||||| | ||||| Sbjct 1360863 CTGCCAAATGTCATGGTATTCCATAGGAAAGATGACAAA 1360901 >seq303989 Length=535067 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 320200 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 320141 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 320140 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 320081 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 320080 CTACAACACGTTCTCC 320065 Score = 109 bits (120), Expect = 5e-19 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || |||||| | Sbjct 322138 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 322080 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 322079 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 322020 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 322019 CATAAAGTCAAATGGATTT 322001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480312579618520