Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq305757 91.5 1e-13 seq303727 91.5 1e-13 seq126465 91.5 1e-13 seq100879 91.5 1e-13 seq130668 89.7 4e-13 seq306752 86.0 5e-12 seq131556 86.0 5e-12 >seq305757 Length=1147529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 || || |||| || | ||| |||| ||| || || || ||||| ||||||||||| || Sbjct 1142475 TAGCCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCA 1142416 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 | | || | |||||||| || ||||| ||| | || || || || || || Sbjct 1142415 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGA 1142356 Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 || | |||||| ||||| || | ||| || | | ||| || |||| ||||| Sbjct 1142355 GGGATGCCTTCTTTATCCTGGATCTTAGCCTTCACGTTTTCAATGGTATCACTAGGCTCA 1142296 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||||| | |||||||||| || || |||||||| ||||| Sbjct 1142295 ACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 1142246 >seq303727 Length=1188818 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATT 18135 || || | ||| |||| ||| | | || || ||||| | || | ||||| || |||| Sbjct 949533 AAGACTTCTTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGATT 949474 Query 18136 CTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGA 18195 | ||||||||||||||||| | || || | |||||||| ||| ||||| ||| ||| Sbjct 949473 CCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 949414 Query 18196 TAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 | |||||||| ||||| || | ||||||||||| Sbjct 949413 TCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 949377 >seq126465 Length=199800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || ||||| |||||| Sbjct 39113 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGATTCCTTTTGA 39054 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 39053 ATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 38994 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || ||||| || | ||||||||||| Sbjct 38993 TGCTGATCAGGAGGAATTCCTTCCTTATC 38965 >seq100879 Length=438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18096 TATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCG 18155 || || |||| || | ||| |||| ||| || || || ||||| ||||||||||| || Sbjct 205 TAGCCACCCCTCAGACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCA 264 Query 18156 GCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG 18215 | | || | |||||||| || ||||| ||| |||| || || || || || Sbjct 265 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 324 Query 18216 GGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCG 18275 || | |||||| ||||| || | ||| || | | | || |||| |||||| Sbjct 325 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCA 384 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | ||||||| | |||||||||| || || |||||||| ||||| Sbjct 385 ACTTCTAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCAT 434 >seq130668 Length=27386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 10029 AGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 9970 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| |||| || || || || || || | ||||||||| || Sbjct 9969 TCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 9910 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | ||||||| || | ||||||| | Sbjct 9909 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 9850 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| || || || || || ||||| Sbjct 9849 TTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 9818 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | ||| Sbjct 9573 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 9514 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| |||| || || || || || || | ||||||||| || Sbjct 9513 TCCAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 9454 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | ||| ||||| | ||||||| || | ||||||| | Sbjct 9453 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 9394 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || |||| || || || || || |||||| Sbjct 9393 TTCCCAGTCAGGGTCTTCACGAAGATCTGCATT 9361 >seq306752 Length=244776 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || |||| || || | ||||| || |||| |||||| Sbjct 147209 TTCCTTTTCTTAGCACCACCACGACGTCTCAGCACAAGATGAAGAGTAGATTTCTTTTGA 147150 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | | |||||||| ||| ||||| ||| |||| |||||| Sbjct 147149 ATGTTGTAGTCAGACAGAGTATGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 147090 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || || || || | ||||||||||| Sbjct 147089 TGCTGGTCAGGAGGAATTCCTTCCTTATC 147061 >seq131556 Length=230148 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 29452 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAACATGAAGAGTAGACTCCTTTTGA 29393 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 29392 ATGTTGTAGTCAGACAGAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 29333 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATC 18232 || ||||| || | ||||||||||| Sbjct 29332 TGCTGATCAGGAGGAATTCCTTCCTTATC 29304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377785089269805