Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq316284 116 3e-21 seq302728 113 4e-20 seq130668 104 2e-17 seq314340 102 7e-17 seq303727 100 3e-16 seq126465 96.9 3e-15 seq316040 95.1 1e-14 seq306752 95.1 1e-14 seq131556 87.8 2e-12 >seq316284 Length=490044 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||||| ||||| ||||| |||||||| || || || || Sbjct 81478 ACCTCATCTTTGCTGGTATACTCTATGATTTCTGTACACAGATTGCTGCATTTGATGGTT 81537 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || |||||||||||| ||||| || | ||| ||||||||||||||||| || Sbjct 81538 CCTATGTTCTGCTGGTTGCTTTTCCGATTACAGGCATCTTTGTAGAGCATGTACGGAGTA 81597 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 81598 CCTGTCTCTGTCTGAGACTCAATGATGGC 81626 >seq302728 Length=1132070 Score = 113 bits (124), Expect = 4e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 ||| || ||||| ||||| || |||||||| || |||||| | || ||||| || || Sbjct 601049 GCAGATCTTCGTGAAGACCCTCACAGGCAAGACAATCACCCTTGAAGTTGAGCCCAGTGA 600990 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || |||| | |||||| | ||| |||||||| ||| | || || |||||||| Sbjct 600989 CACCATCGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAGCA 600930 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACAT 31374 |||||| ||||| || ||||||||| |||| || | ||| | || || ||||| Sbjct 600929 GCGTCTGATATTTGCAGGCAAACAGCTGGAGGATGGTCGCACTCTTTCAGAATACAACAT 600870 Query 31375 TCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || || ||||| || | ||||| || || Sbjct 600869 CCACAAAGAGTCCACCCTGCACCTGGTGCTGTGCCTGAGAGGTGG 600825 >seq130668 Length=27386 Score = 104 bits (114), Expect = 2e-17 Identities = 170/241 (71%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 31181 ATTGAATCAAACA-TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGA 31239 |||| | || ||| |||| || ||||| ||||| ||||| || || || |||||| | || Sbjct 9349 ATTGTAACAGACAATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGA 9408 Query 31240 CGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCG 31298 || || || ||||| | || | ||||| || ||| | ||||||||||||| Sbjct 9409 GGTCGAGCCCAGCGACACCATTGAGAACGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCA 9467 Query 31299 TGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTA 31358 | || || ||||||||| | || || || || ||||||||| |||||||| || Sbjct 9468 TCCCTCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGCACCC 9527 Query 31359 TGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCG 31418 || || || ||||| || ||||| || || || || ||||| || | ||||| || | Sbjct 9528 TGTCTGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGTCTGAGAGGGG 9587 Query 31419 G 31419 | Sbjct 9588 G 9588 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || |||||| | || || || || | Sbjct 9818 ATGCAGATCTTCGTGAAGACCCTGACTGGGAAGACCATCACCCTGGAGGTCGAGCCCAGC 9877 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 9878 GACACCATTGAGAACGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCTCCTGACCA 9936 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || || || ||||||||| ||||||| | | | || || || || | Sbjct 9937 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 9995 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || || || || |||| || | ||||||| ||| Sbjct 9996 ACATCCAGAAAGAGTCCACCCTGCACTTGGTCCTGCGTTTGAGGGGGGGT 10045 >seq314340 Length=1169179 Score = 102 bits (112), Expect = 7e-17 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| | || ||||| || Sbjct 629533 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACAATCACCCTTGAAGTTGAGCCCAGT 629592 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | |||||| | || ||| |||||||| ||| | || || ||||| Sbjct 629593 GACACCATAGAGAATGTCAAAGCTGA-AATCCAAGACAAGGAGGGCATCCCACCTGACCA 629651 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||||||| ||||| || ||||||||| |||| || | || ||| | || || | Sbjct 629652 GCAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGA-TGGCTGCACTCTTTCAGACTACA 629710 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || ||||| || || || || ||||| || Sbjct 629711 ACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 629744 >seq303727 Length=1188818 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | || || || || || || || |||||| |||| |||||||| Sbjct 949281 AAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 949340 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 949341 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 949400 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 949401 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTCTGTCTGACTA 949459 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| ||||| ||||||||||| || | ||||| Sbjct 949460 CAACATTCAAAAGGAATCTACTCTTCATCTTGTGTTGAGACT 949501 >seq126465 Length=199800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | || || || || || || || |||||| || | |||||||| Sbjct 38869 AAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCAAGGTTGAACCC 38928 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 38929 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 38988 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 38989 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTCTGTCTGACTA 39047 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| ||||| ||||||||||| || | ||||| Sbjct 39048 CAACATTCAAAAGGAATCTACTCTTCATCTTGTGTTGAGACT 39089 >seq316040 Length=1005281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||| | ||||| || || ||||| || |||||| | || || || || Sbjct 910254 ATGCAGATCTTCATGAAGACCCTCACGGGCAAGACAATCACCCTTGAAGTGGAGCCCAGT 910313 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||| ||| | || || |||||| Sbjct 910314 GACACCATCGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATTCCACCTGACCAG 910373 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| ||||| || ||||||||| |||| || ||| | || || ||| Sbjct 910374 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTTTCAGACTACAAC 910433 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || || || ||||| || Sbjct 910434 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 910465 >seq306752 Length=244776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| | || || || || || || || ||||| |||| |||||||| Sbjct 146965 AAGATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACTCTCGAGGTTGAACCC 147024 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || ||| Sbjct 147025 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 147084 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | || || || |||||||| || ||||||| ||| || || || Sbjct 147085 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTCTGTCTGACTAC 147144 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGAC 31409 ||||||||||| |||| ||||||||||| || || |||| Sbjct 147145 AACATTCAAAAGAAATCTACTCTTCATCTTGTGCTGAGAC 147184 >seq131556 Length=230148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 |||| |||||| | || || || || || || || ||||| |||| ||| |||| | | Sbjct 29212 TGCAGATTTTCATGAAAACCCTTACCGGGAAGACCATCACTCTCGAGGTTCAACCTCCAG 29271 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| || |||| || || || ||| | || |||||||| | || || || ||| Sbjct 29272 ACACAGTAGAAAATGTAAAGACCAAGA-TCCAAGATAAGGAAGGAATTCCTCCTGATCAG 29330 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || |||||||| || ||||||| | ||| ||| || || || || Sbjct 29331 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTCTGTCTGACTACAA 29389 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||| || || ||||||||| | || | ||||| Sbjct 29390 CATTCAAAAGGAGTCTACTCTTCATGTTGTGTTGAGACT 29428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443887555916880