Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq117952 132 9e-26 seq301619 122 2e-22 seq303989 93.3 8e-14 seq314877 84.2 4e-11 >seq117952 Length=1479372 Score = 132 bits (146), Expect = 9e-26 Identities = 296/443 (67%), Gaps = 11/443 (2%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||| | ||||| ||||||||| |||| | || ||||| || |||| Sbjct 1360281 TTGTAGCCTTTGCTGCAATGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 1360222 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| || | ||||||||||||| | |||| ||| | ||| || | Sbjct 1360221 GGCTCAAGAAACAAGGACTGATGCCTGGTCTCACATTTTCCAGTGAACTTATTAACAGAG 1360162 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 || ||| | || | |||||||| ||| || |||| ||| | ||| || | Sbjct 1360161 TTGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACA-------CCTGACACAC 1360109 Query 102096 CATCAA---GAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | | | ||| |||| | ||||| ||| | || ||| | || ||||| || Sbjct 1360108 AAACCATTGGAGCAAAGAGTAAAAGAAATAATCATCAATGCTGTCAGGATAGAACAGGAG 1360049 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || | ||| | || ||||||| || | | || ||||| |||| || |||| || Sbjct 1360048 TTCCCCACCGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCATCTTAATGAAGCAA 1359989 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 ||||| || |||||||| |||| ||| || | ||| |||| | ||| | || Sbjct 1359988 TACATCGAGTTTGTGGCCGATAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAAA 1359929 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || || || || |||||||| |||||||| || || |||| ||||| ||| Sbjct 1359928 GTAGAAAATCCATTTGACTTCATGGAGAATATTTCACTGGAAGGAGAGACAAACTTCTTT 1359869 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || |||||||| | | | ||||| Sbjct 1359868 GAGAAGAGAGTAGGCAAATATCA 1359846 >seq301619 Length=432943 Score = 122 bits (134), Expect = 2e-22 Identities = 296/445 (67%), Gaps = 15/445 (3%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| |||| |||| |||| | || |||| || |||| Sbjct 188838 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTGCTTTTCTGGTTCTTTTACATCGATATTCT 188779 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | ||||||| ||||| | ||||||| | ||| || | Sbjct 188778 GGCTCAAGAAATGAGGACTGATGCCTGGCCTCACATTTCCCAATGAACTTATTAGCAGAG 188719 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 | || || | || | |||||||| ||| || | || ||| | |||||| | Sbjct 188718 ATGAGGGCTTACACTGTGACTTTGCCTGCCTGATATTCAAACA-------CCTGATACAC 188666 Query 102096 CATCAA---GAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | | | ||| | || | ||||| ||| | || || | || ||||| || Sbjct 188665 AAACCATCGGAGCAGAGAGTAAAAGAAATAATCATCAATGCAGTTAGGATAGAACAGGAG 188606 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || ||||||| || ||||||| || | | || ||||| |||| || |||| || Sbjct 188605 TTCCTCACAGAAGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCATTTTAATGAAGCAA 188546 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 ||||| || |||||||| || | ||| || | ||| |||| | ||| | || Sbjct 188545 TACATCGAGTTTGTGGCTGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAAA 188486 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGA--GAATAAGACCAACTTTT 102329 || || || || || ||||| |||| ||| || || |||| ||| ||||| | Sbjct 188485 GTAGAAAATCCATTTGACTTGATGGATAATACTTCACTGGAAGGAAT--GACTAACTTCT 188428 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCA 102354 |||| |||||||| | ||| ||||| Sbjct 188427 TTGAGAAGAGAGTAGGCGAATATCA 188403 >seq303989 Length=535067 Score = 93.3 bits (102), Expect = 8e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||||||||| ||||| ||||||||| |||| | || ||||| || |||| Sbjct 320075 TTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 320134 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 320135 GGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGA 320180 >seq314877 Length=772221 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 |||||| | || ||||| || || || ||||||||| | ||| || | | |||| | Sbjct 568742 ATCTGGGATGCCAATGGATCCCGAGACTTTTTGGACTGCCTAGGATTCTCCACCAGAGAA 568683 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA 35448 || ||||||||||| || || || || ||||||||| | |||||||| || ||||| Sbjct 568682 GAAGGAGATTTGGGCCCTGTCTATGGCTTCCAATGGAGGCATTTTGGGGCAGAATA 568627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 985308765495495