Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq301619 269 2e-67 seq301777 197 1e-45 seq117952 179 3e-40 seq289273 136 4e-27 seq303989 120 3e-22 seq96983 114 1e-20 seq316284 105 6e-18 >seq301619 Length=432943 Score = 269 bits (298), Expect = 2e-67 Identities = 593/881 (67%), Gaps = 21/881 (2%) Strand=Plus/Plus Query 11342 TGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400 |||||||| | |||| || | || || || |||||| | ||||| ||||| ||| || Sbjct 188403 TGATATTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTATTATC 188461 Query 11401 CATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAA 11460 ||| ||| ||| ||||| | ||| ||||| || || | |||| | || | | Sbjct 188462 CATCAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 188521 Query 11461 TCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATC 11520 ||| || || || || || || || || ||||||| |||||||| || || || | Sbjct 188522 TCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAATGAGCTT 188581 Query 11521 CACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGA 11580 ||| || | || |||| | ||||||| |||||| |||| |||| |||||||| Sbjct 188582 CACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATTATTTC 188641 Query 11581 CGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATC 11640 ||| | || |||||| |||| | ||||| || || | || ||||| || Sbjct 188642 TTTTACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTGAATATCAGGCAGGCAAAGTC 188701 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 ||| ||||| || || ||||| || || |||||||| | |||||| | || ||||||| Sbjct 188702 ACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCAGGCATCAG 188761 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 ||||| ||| || | ||| ||||| | | ||| |||||||||||| | || || ||||| Sbjct 188762 TCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCCTTCCAC 188821 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATA--TA----CCTTGTTGCTAGATATCCATTT 11814 || ||||| ||||| || | ||||||||| || | |||| | || |||| Sbjct 188822 TGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAG---TCCAACG 188878 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAA 11872 ||||||||| || ||||| || || || ||| || || || || || | | ||| Sbjct 188879 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 188938 Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 | | ||||| | ||| | | || || || || | | ||| |||||||| ||| Sbjct 188939 TTC--CCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAA 188996 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || || |||||||| || ||||| || ||||||||||| || || |||| | || || Sbjct 188997 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACT 189056 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || ||||| ||| | || || |||||||| || ||||| || | |||||| || Sbjct 189057 TCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGAAA 189116 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTC---TTTAGTTAATTTATCCCAATCATCT 12109 | || | | | |||||| ||| | || | ||| || ||||| | Sbjct 189117 GTCAGAACACGCGATATAAAATATCTCTCCACAGGTTTCAGGGAT---TCCCAGTGCCGG 189173 Query 12110 AAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATAC 12169 | ||||| | | ||| || |||||| | |||||||| ||| | | || | ||| Sbjct 189174 AGGTCTTTGGTAAGATCAACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCGTGTAC 189233 Query 12170 ATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || | |||||| ||||| |||| ||||| || || || || Sbjct 189234 ATCTGCCAGATGTCATGGTACTCGATAGGAAAGATGACAAA 189274 >seq301777 Length=185553 Score = 197 bits (218), Expect = 1e-45 Identities = 502/756 (66%), Gaps = 21/756 (3%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| || | ||| | ||| | ||| | |||||| | | |||| || | || | Sbjct 170373 ATTCTCTGTTTGACTTGACATCACTCGCATTCTCTGATATCCGCCTACTC-TCTTCTCAA 170315 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| |||| ||||| |||| |||| | ||| ||| ||| | | ||| | Sbjct 170314 AGAAGTTAGTCTTTCCTTTCAGTGAAATATTCTCCGTGAAGTCAAATGGACTTTCTACTT 170255 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | || | | || || | ||| | | || || || || || Sbjct 170254 TGAAAACCTTGCTAAAATCCAGTTCCAGTATAAGTCTGTTGCCCACAAACTCGATGTATG 170195 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||||| |||||||| || | || | ||| || | || || | |||| Sbjct 170194 GCTTCATTAAAATGCAATTCATCCCAGTGAGCTTCACAGGCAGGGCCTAGGTGAGGAACT 170135 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||||| |||| |||| |||||||| ||| | || || ||| | Sbjct 170134 CCTGTTCTATCCTAACAGCATTGATGATTATTTCTTTTACTCTCTGCTGTGACGGTTTGT 170075 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| | ||||| || || | || ||||| ||||| ||||||| || ||||| || | Sbjct 170074 GTATCAGGTGTTTGAATATCAGGCAGGCAAAGTCACAGTGTAAACTCTCATCTCTGCTAA 170015 Query 11667 T----TAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAAT 11722 | ||||||| | ||| |||| | || ||||||| |||| |||| || | ||| ||| Sbjct 170014 TAAGTTAGTTCACTGGAACATGTGAGGCCAGGCATCATTCCTTGTTTCTTGAGCCAGAAT 169955 Query 11723 ATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTT 11782 || |||| |||||||||||||| || || |||| || ||||| ||||| || Sbjct 169954 ATCAATACAAAAGAACCAGAAAAGAAGATGCCTCCCACTGCAGCAAAGGCTACAACATGC 169895 Query 11783 TCTCCATATA----CCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTT 11837 ||||||| | ||| ||| | || ||||| | ||||||| || ||||||| Sbjct 169894 TCTCCATTAAGTAGCCTCCTTGTCCTGA-ATCCAATGCAAGGCCCAACTTGCCTTCTTTT 169836 Query 11838 TTACGCATTCCATTGTTTCTATAGCGTTAA--ATAAATGCATTTTTTCTATATTATCTCT 11895 | || || ||| || || || ||||| | |||||| | | ||| | ||| | Sbjct 169835 TGACACAGGGCATCGTCTCAATGGCGTTGATGATAAATTCCCTCTTTGGA----GTCTTT 169780 Query 11896 TACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTG 11955 | || || || || | | ||| ||||||| ||||| || |||||||| || ||||| Sbjct 169779 AATGTAAGTGTCAATAAGGAGACTGCACATTTCAGAATGTATGTTTTCCATGGCAATTTG 169720 Query 11956 AAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAA 12015 || ||||||||||| | || |||| | || || || ||||| ||| | || Sbjct 169719 GAAGCCATAGAAACAGTGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAA 169660 Query 12016 ATTCTCATTTACAATACCATCACTAGATGCAAAAAA 12051 || |||||||| || |||||| | ||||| ||| Sbjct 169659 GTTTTCATTTACTATGCCATCATT---TGCAACAAA 169627 >seq117952 Length=1479372 Score = 179 bits (198), Expect = 3e-40 Identities = 312/451 (69%), Gaps = 2/451 (0%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| ||||| | ||||||| | |||| || | || || || || |||| ||||| | Sbjct 1359833 CACTCCCATTCTCTGATATTTGCCTACTC-TCTTCTCAAAGAAGTTTGTCTCTCCTTCCA 1359891 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||| ||| ||| ||||| | ||| ||||| || || | |||| | Sbjct 1359892 GTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCCA 1359951 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 || | | |||||| || || || || || || || |||||| ||||||| Sbjct 1359952 GTTCCAGCATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAATTCA 1360011 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| || | || | || ||||||| |||||| | || |||| Sbjct 1360012 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTTCTATCCTGACAGCAT 1360071 Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627 |||||||| ||| || || ||||| ||| | ||||| ||||| | Sbjct 1360072 TGATGATTATTTCTTTTACTCTTTGCTCCAATGGTTTGTGTGTCAGGTGTTTGAACATCA 1360131 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 || ||||| ||||| |||||||| || |||| | || |||||| | |||||||| | Sbjct 1360132 GGCAGGCAAAGTCACAGTGTAAACCCTCAACTCTGTTAATAAGTTCACTGGAAAATGTGA 1360191 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747 || ||||||| |||| |||| || | ||| ||||| | ||||| ||||||||||||| Sbjct 1360192 GACCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGA 1360251 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTAC 11778 | || || |||| || ||||| ||||| || Sbjct 1360252 AGATGCCTTCCATTGCAGCAAAGGCTACAAC 1360282 >seq289273 Length=322959 Score = 136 bits (150), Expect = 4e-27 Identities = 291/428 (68%), Gaps = 15/428 (4%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || |||||||| |||||||| || | ||||| |||| |||| || | || ||||| Sbjct 72673 ATAAGTTCATTGGAAAATGTAAAGCTTCACATCAGTCCTTGTTTCTTGAGGCAGAATATC 72732 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | ||||| |||||| ||||||| || || || || || ||||| ||||| || | |||| Sbjct 72733 GATGCAAAAGAACCAAAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACATTCT 72792 Query 11786 CCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| | || ||| ||| | ||||| | ||||||||| || || || || || Sbjct 72793 CCAAAAGTAGCCTCTTTGTTCCCAATCCAACCTAAGGCCCAATCTGCCTTTTTCTTGACA 72852 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACAT 11900 || || || | || | ||| || | | |||| ||||| | ||| ||| Sbjct 72853 CAAGGCAACGTCTTAATGGTGTTGAAGAGAA--ATTTCCTTTCTTTGCAGTCT-TTA--- 72906 Query 11901 ATGTATCTATTAATAA----ACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGA 11956 ||||| | | ||||| ||| || ||||| |||| || | |||||| || ||||| Sbjct 72907 ATGTAAATGTCAATAAGGAGACTGTATATTTCAGAATATATGTGTTCCATGGCAATTTGG 72966 Query 11957 AATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAA 12016 |||||||||||| | | || ||| | || || || ||||| || | || Sbjct 72967 AATCCATAGAAATAGCAGGCTTCTATAATTTGAACTTCTTGGCTAAATCACTCTACCAAG 73026 Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 | |||||||| || |||||||| | |||||| || || || | |||| |||||| ||| Sbjct 73027 CTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGTGATATAAAATAT 73086 Query 12077 TTTTCGTC 12084 |||| || Sbjct 73087 CTTTCCTC 73094 >seq303989 Length=535067 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||||| ||||||||| || Sbjct 320198 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 320139 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 320138 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 320079 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 320078 ACAACACGTTCTCC 320065 >seq96983 Length=126056 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | || ||||| | |||| || | Sbjct 32465 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGCCCAGGCATAAGACCTCTCTTCT 32406 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| |||||||| ||||| | Sbjct 32405 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 32346 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 32345 CCACCACTCTTTCCCC 32330 >seq316284 Length=490044 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || |||||||| ||||| ||||||||| Sbjct 71644 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATATTGCTGGTATAAGGTTCAATG 71703 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 71704 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 71763 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 71764 CTGTTTCTTATACCAT 71779 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || || || |||||||| || ||||| | || |||| | | | |||| || Sbjct 68919 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAATTAGGCTCAGCAATATGAATGT 68978 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || |||||||| || || ||||||||||| ||| |||| | | ||| || Sbjct 68979 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTGTCAGCTCCCATCTTGATAATGATTT 69038 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 | ||||| || ||||| || |||||||| | ||| || Sbjct 69039 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTT 69075 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | || ||||| ||||| | ||||| |||| || | | ||| Sbjct 90372 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACCTTTCAGAAAGAAGGTTA 90431 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 |||||||| ||| || |||| || || | | |||||| || | || ||| ||||| | | Sbjct 90432 TATGTTTCAATTGCAGCATCAATGTCTTCTCTGTGAATCCCCACAGCTACTCTCATCAAC 90491 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||||||||||||||| Sbjct 90492 ATATGTTGTGGTCTTTC 90508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466550032390160