Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq301619 98.7 7e-16 seq117952 96.9 2e-15 >seq301619 Length=432943 Score = 98.7 bits (108), Expect = 7e-16 Identities = 362/558 (65%), Gaps = 23/558 (4%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||||| ||| || | || || |||||||| | ||| ||||| ||||||| | || Sbjct 189235 ATGTACACGAAAGCTGAGGCCTCCTTTTGGACAGCTGAAGAGGTTGATCTTACCAAAGAC 189176 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTCATGTCTCACATACTG 22464 | || || ||| ||| |||| | ||| | || || || | | ||| Sbjct 189175 CTCCGGCACTGG---GAATCCCTGAAACCTGTGGAGAGATATTTTATATCGCGTGTTCTG 189119 Query 22465 GCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCGCAAA 22523 | ||||||||| ||||||||| ||| || ||| | ||| || |||| || || Sbjct 189118 ACTTTCTTTGCAGCAAGAGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAA 189059 Query 22524 AGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAAA 22583 ||| || | || |||||||| | ||||||||| || || | || |||||||| Sbjct 189058 -GAAGTTCAAGTTA---CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 189003 Query 22584 TATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG----AATC 22639 |||||| |||||||||| | || || ||| ||| | | |||||| || Sbjct 189002 CATACATTCTGAAATGTACAGTCTCCTTATTGACACTTACAT---TAAAGACCCCAAAGA 188946 Query 22640 AAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTG 22697 ||| || | |||| || ||| ||||| ||||| || |||||| | || Sbjct 188945 AAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTCAAGAAGAAGGCAGATTG 188886 Query 22698 GGCTGCACAATGG-CTGAATGCCACACATAAGT--CTATCGCAACACGTCTCTTGGCCTT 22754 ||| | ||| ||| | ||| | | | || | | |||| | | ||||| Sbjct 188885 GGCCTTGCGTTGGACTG---GGGACAAAGAGGCTACTTATGGAGAACGTGTTGTAGCCTT 188829 Query 22755 TGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAA 22814 ||| || || |||||| || |||||||| || ||| | | ||||||||||| ||||| Sbjct 188828 TGCTGCAGTGGAAGGCATCTGCTTTTCTGGTTCTTTTACATCGATATTCTGGCTCAAGAA 188769 Query 22815 ACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCT 22874 | | || ||||| || | | ||| |||| || | |||||| | || || || | Sbjct 188768 ATGAGGACTGATGCCTGGCCTCACATTTCCCAATGAACTTATTAGCAGAGATGAGGGCTT 188709 Query 22875 ACACTGTGACTTTGCTTG 22892 ||||||||||||||| || Sbjct 188708 ACACTGTGACTTTGCCTG 188691 >seq117952 Length=1479372 Score = 96.9 bits (106), Expect = 2e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || | |||||| || | |||||||| || ||||| | ||||||||||| Sbjct 1360276 GCCTTTGCTGCAATGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCGATATTCTGGCTC 1360217 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||||| || ||||| || | | ||||||| || | |||| | | | || Sbjct 1360216 AAGAAACAAGGACTGATGCCTGGTCTCACATTTTCCAGTGAACTTATTAACAGAGTTGAG 1360157 Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 ||| |||||||||||||||| || || |||| | || || || ||||||| Sbjct 1360156 GGTTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCTGACACACAAACC 1360104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354769661249167