Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq305757 98.7 1e-15 seq131556 98.7 1e-15 seq303727 95.1 1e-14 seq126465 91.5 1e-13 seq100879 89.7 5e-13 >seq305757 Length=1147529 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| || ||||| ||||| Sbjct 1142244 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAATCAGAA 1142185 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| || ||||| Sbjct 1142184 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1142125 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| || || | | || | || || ||||||| ||| Sbjct 1142124 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACC 1142065 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||||| ||||| ||||| || ||||| Sbjct 1142064 TCTAGGGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 1142018 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || |||||||| |||||||| ||||| | |||| Sbjct 1142461 ACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCC 1142402 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| | || || | ||||| || ||||| ||||||||||| Sbjct 1142401 ATCTTCCAGCTGCTTGCCTGCAAAAATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTT 1142342 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | ||| | || || | ||||| || || | ||| | Sbjct 1142341 ATCCTGGATCTTAGCCTTCACGTTTTCAATGGTATCACTAGGCTCAACTTCTAGGGTGAT 1142282 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || || || || |||||| Sbjct 1142281 GGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCATA 1142245 >seq131556 Length=230148 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| |||||||| ||||||||||| || || || || | || | ||||| || || Sbjct 29413 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGAGTACATCCA-TCTTCCAGTTG 29355 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 29354 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTT 29295 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| |||||||| | || | ||||| | || | ||||| ||||| Sbjct 29294 GGTCTTTACATTTTCTACTGTGTCTGGAGGTTGAACCTCGAGAGTGATGGTCTTCCCGGT 29235 Query 139741 CAACGTTTTTACGAATATTTGCA 139763 | ||||| | ||| || |||| Sbjct 29234 AAGGGTTTTCATGAAAATCTGCA 29212 >seq303727 Length=1188818 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| ||||| || ||||||||||| || || || || | || | ||||| || || Sbjct 949486 TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAGTTG 949428 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 949427 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 949368 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || ||||| | ||| | ||||| || || Sbjct 949367 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGT 949308 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| | ||| || ||||| Sbjct 949307 AAGGGTTTTCATGAAAATCTGCAT 949284 >seq126465 Length=199800 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| ||||| || ||||||||||| || || || || | || | ||||| || || Sbjct 39074 TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAGTTG 39016 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| ||||||| | ||||||||| ||||| || ||||| || || ||| || Sbjct 39015 CTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 38956 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | ||| | ||| || | ||| || |||| | ||| | ||||| || || Sbjct 38955 GGCCTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGGGTGATGGTCTTCCCCGT 38896 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| | ||| || ||||| Sbjct 38895 AAGGGTTTTCATGAAAATCTGCAT 38872 >seq100879 Length=438 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| | ||| | || |||||||| |||||||| ||||| | |||| Sbjct 219 ACGAAGAACCAGGTGCAGGGTCGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGCGGCC 278 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| |||| || | ||||| || ||||| ||||||||||| Sbjct 279 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTT 338 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | || | || || ||||||| || || | ||| | Sbjct 339 ATCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACTTCTAGGGTGAT 398 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || || || || |||||| Sbjct 399 GGTCTTGCCGGTCAGGGTCTTCACAAAAATCTGCATA 435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493973158448800