Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq301619 307 1e-78 seq301777 214 2e-50 seq117952 176 4e-39 seq289273 172 5e-38 seq303989 123 2e-23 >seq301619 Length=432943 Score = 307 bits (340), Expect = 1e-78 Identities = 637/940 (68%), Gaps = 16/940 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13581 || || ||| |||| || | |||| ||| || | ||| | || || || | ||| Sbjct 188343 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC--CGTTGGACTTGACATCACTCATATTC 188400 Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 | |||||||| | ||||| || |||||||||||||| | ||||||||||| |||| | Sbjct 188401 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTATTAT 188460 Query 13642 CCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 13701 |||| || |||||||||||| | | || || || | |||| ||||| | | | Sbjct 188461 CCATCAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 188520 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 ||| ||||| | |||||| || ||||| ||||||| |||||||| || || || | Sbjct 188521 GTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAATGAGCT 188580 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 | ||||| | | || | || || | |||||| || || | | || || Sbjct 188581 TCACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATTAT-- 188638 Query 13822 TTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 || | || |||| | || || | | | || ||||| || || | || ||||| Sbjct 188639 TTCTTTTACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTGAATATCAGGCAGGCAAA 188698 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||||| || | |||||||||||| ||||||||||| || | |||||| | || ||||| Sbjct 188699 GTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCAGGCAT 188758 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || ||||| ||| || | ||| ||||| | | ||| || || |||||| | || || || Sbjct 188759 CAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCCTTC 188818 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||||||||||| |||| | ||||||||| | | || | ||||| | |||| Sbjct 188819 CACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAGTCCAACG 188878 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || || || | | || ||| || ||||| ||||| || | | | Sbjct 188879 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 188938 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| | ||||| | | |||||| || |||||||| | || ||||||||||| || Sbjct 188939 TTCCCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATG 188998 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 |||||||||||| || || || || ||||| || || | ||||| | ||| ||||| Sbjct 188999 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTC 189058 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | ||||| || |||| |||||||| ||||| ||||| || |||||||| || | Sbjct 189059 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGAAAGT 189118 Query 14300 C--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT--CGGATA 14355 | || | | | ||||| ||| ||| || || || || ||| | ||| | Sbjct 189119 CAGAACACGCGAT--ATAAAATATCTCTCCACAGGTTTCAGGGATTCCCAGTGCCGG--A 189174 Query 14356 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14415 || || | |||||| || || ||| |||||||||| || ||||||| | |||| Sbjct 189175 GGTCTTTGGTAAGATCAACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCGTGTACA 189234 Query 14416 TTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 | ||| || || | || |||||||| | ||||| Sbjct 189235 TCTGCCAGATGTCATGGTACTCGATAGGAAAGATGACAAA 189274 >seq301777 Length=185553 Score = 214 bits (236), Expect = 2e-50 Identities = 496/743 (67%), Gaps = 11/743 (1%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || | |||| | |||||| | | ||||| || |||||||||||||| || ||| Sbjct 170357 GACATCACTCGCATTCTCTGATATCCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 170298 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 | |||||| ||||| ||| | || ||||||||| || | | || || || | || Sbjct 170297 TTCAGTGAAATATTCTCCGTGAAGTCAAATGGACTTTCTACTTTGAAAACCTTGCTAAAA 170238 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 | ||||| | || | ||| | | | |||||| || ||| | ||||||| ||| Sbjct 170237 TCCAGTTCCAGTATAAGTCTGTTGCCCACAAACTCGATGTATGGCTTCATTAAAATGCAA 170178 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || | || || ||||| | | ||| | || || | |||||| ||| Sbjct 170177 TTCATCCCAGTGAGCTTCACAGGCAGGGCCTAGGTGAGGAACTCCTGTTCTATCCTAACA 170118 Query 13806 GCCTCTTTTATAATAATTGTAATAATCTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 13863 || | | || || || | || |||| | || || | | | || ||||| | Sbjct 170117 GCATTGATGATTAT--TTCTTTTACTCTCTGCTGTGACGGTTTGTGTATCAGGTGTTTGA 170060 Query 13864 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT---- 13919 | || | || ||||| ||||| || | | ||||||||| |||||||||| ||| Sbjct 170059 ATATCAGGCAGGCAAAGTCACAGTGTAAACTCTCATCTCTGCTAATAAGTTAGTTCACTG 170000 Query 13920 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC 13979 ||| |||| | || ||||||| |||| |||| || | ||| ||||| |||| || Sbjct 169999 GAACATGTGAGGCCAGGCATCATTCCTTGTTTCTTGAGCCAGAATATCAATACAAAAGAA 169940 Query 13980 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAA-ACGATGC 14038 || |||||||| || || | ||||||||||| |||| | | |||||| | | || Sbjct 169939 CCAGAAAAGAAGATGCCTCCCACTGCAGCAAAGGCTACAACATGCTCTCCATTAAGTAGC 169880 Query 14039 TTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 14098 | |||| | ||||| | ||||| | || ||||| | | | ||| || Sbjct 169879 CTCCTTGTCCTGAATCCAATGCAAGGCCCAACTTGCCTTCTTTTTGACACAGGGCATCGT 169820 Query 14099 TTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAG 14158 ||||| || || | | | ||||| ||| | ||| || |||||| || |||||||| Sbjct 169819 CTCAATGGCGTTGATGATAAATTCCCTCTTTGGAGTCTTT--AATGTAAGTGTCAATAAG 169762 Query 14159 TAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCT 14218 | || |||||||||| |||||||||||||| || || || || ||||| || || Sbjct 169761 GAGACTGCACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGTG 169702 Query 14219 AGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACC 14278 ||||| | ||| ||||| | ||||| || |||| |||||||| ||||| || Sbjct 169701 GGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 169642 Query 14279 ATCACTAGCTGCAAAAAATGCCA 14301 |||| | || |||| ||| || Sbjct 169641 ATCATTTGCAACAAACGATGGCA 169619 >seq117952 Length=1479372 Score = 176 bits (194), Expect = 4e-39 Identities = 312/453 (69%), Gaps = 4/453 (1%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | ||||||| | ||||| || ||||||||||| || | ||| Sbjct 1359828 GACATCACTCCCATTCTCTGATATTTGCCTACTCTCTTCTCAAAGAAGTTTGTCTCTCCT 1359887 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| ||||| || |||||||||||| | | || || || | || Sbjct 1359888 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAA 1359947 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || ||||| | | | |||||| || | |||||| || ||||| |||||| ||| Sbjct 1359948 CCCAGTTCCAGCATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAA 1360007 Query 13746 TTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACA 13805 ||||| || || || || ||||| | | ||| || || | |||||| ||| Sbjct 1360008 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTTCTATCCTGACA 1360067 Query 13806 GCCTCTTTTATAATAATTGTAATAATC--TCATTAGAAGGAGGATATTTTAGATGTTTAA 13863 || | | || || || | || || | | | || | | | || ||||| | Sbjct 1360068 GCATTGATGAT--TATTTCTTTTACTCTTTGCTCCAATGGTTTGTGTGTCAGGTGTTTGA 1360125 Query 13864 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAA 13923 | || | || ||||| ||||| || | |||||| |||| |||||||||| | |||| Sbjct 1360126 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCAACTCTGTTAATAAGTTCACTGGAAA 1360185 Query 13924 ATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGG 13983 |||| | || ||||||| |||| |||| || | ||| ||||| | ||||| || || | Sbjct 1360186 ATGTGAGACCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAG 1360245 Query 13984 AAAAGAATATTCCCTCAACTGCAGCAAACGCTA 14016 ||||||| || || || | ||||||||| |||| Sbjct 1360246 AAAAGAAGATGCCTTCCATTGCAGCAAAGGCTA 1360278 Score = 125 bits (138), Expect = 7e-24 Identities = 271/396 (68%), Gaps = 12/396 (3%) Strand=Plus/Plus Query 14065 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCT 14124 |||| || | || ||||| | | || |||| || ||||| ||||| || | | ||| | Sbjct 1360513 CCCAATCTGCCTTCTTTTTGACACAAGCCATCGTCTCAATGGCATTGAAGAGAAATTTCC 1360572 Query 14125 TCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14182 | ||||| ||| ||| || || || |||||||| | ||| |||| |||| ||||| Sbjct 1360573 TTTCTTTGCAGT-CTTTAATGTTAAGTGTCAATAAGGAGACTA--CATTCCAGAATGTAT 1360629 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CG 14241 |||||||| ||| || || || ||||| || | | |||||| | ||| ||||| | Sbjct 1360630 GTTTTCCACAGCAATTTGGAAGCCATAGAAATAGCGAGCTTCTGTAACTTGAACTTCTTG 1360689 Query 14242 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC-- 14299 | | ||||| || ||| |||||||| ||||| ||||| || |||||||| || || Sbjct 1360690 ACT-AAATCACTC-CACAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCA 1360747 Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATC 14359 ||| ||| | ||||| | | ||| ||| || || || ||| | | || Sbjct 1360748 CAACATGCGAT--ATAAAATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGGAGGTC 1360805 Query 14360 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTAC 14419 ||| |||||||| || | || ||||||||| || ||||||| |||||||| Sbjct 1360806 CTTGGAAAGATCAACCTTCTCGGTTGTCCAAAAGGAGGCCTCAGCTTTCTTATACATCTG 1360865 Query 14420 CCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| || || | ||| |||||||| | ||||| Sbjct 1360866 CCAAATGTCATGGTATTCCATAGGAAAGATGACAAA 1360901 >seq289273 Length=322959 Score = 172 bits (190), Expect = 5e-38 Identities = 279/398 (70%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 13906 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965 |||||||||| || |||||||| || | | ||||| |||| |||| || | || |||| Sbjct 72671 TAATAAGTTCATTGGAAAATGTAAAGCTTCACATCAGTCCTTGTTTCTTGAGGCAGAATA 72730 Query 13966 TTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 | | ||||| || || ||||||| || || || ||||||||||| |||| | | || Sbjct 72731 TCGATGCAAAAGAACCAAAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACATT 72790 Query 14026 CTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14085 ||||||| | || | ||||||| ||||| | ||||| || | ||||| || | Sbjct 72791 CTCCAAAAGTAGCCTCTTTGTTCCCAATCCAACCTAAGGCCCAATCTGCCTTTTTCTTGA 72850 Query 14086 TAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAAT 14143 | || || || | ||| | || || | | ||| | | ||||| ||| ||| ||| Sbjct 72851 CACAAGGCAACGTCTTAATGGTGTTGAAGAGAAATTTCCTTTCTTTGCAGT-CTT-TAAT 72908 Query 14144 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14203 ||| | |||||||| | || || |||||||| | ||||| |||||| || || || || Sbjct 72909 GTAAATGTCAATAAGGAGACTGTATATTTCAGAATATATGTGTTCCATGGCAATTTGGAA 72968 Query 14204 ACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATT 14263 ||||| || | | ||||| ||| ||||| | ||||| || |||| | Sbjct 72969 TCCATAGAAATAGCAGGCTTCTATAATTTGAACTTCTTGGCTAAATCACTCTACCAAGCT 73028 Query 14264 TTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 |||||| ||||| |||||||| |||||||| || |||| Sbjct 73029 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 73066 Score = 113 bits (124), Expect = 4e-20 Identities = 147/200 (74%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | ||||||| | ||||| || |||||||||||||| || ||| Sbjct 72096 GACATCACTCCCATTCTCTGATATTAGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 72155 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAA 13685 |||||||| ||||| |||||||| |||||||||||| | | ||||| | || Sbjct 72156 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT---ACTCTGACTTTGCTAAAA 72212 Query 13686 CCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13745 || ||||| | | | ||||||| | | ||||||||| ||||| | ||||| ||| Sbjct 72213 CC-AGTTCCAGCATAAGTCTATCAACCACAAACTCAATGTATTGCTTC-TTAAAGTGCAA 72270 Query 13746 TTCATACCTATTAGTTTTAC 13765 ||||| || || || || || Sbjct 72271 TTCATCCCAATGAGCTTCAC 72290 Score = 102 bits (112), Expect = 8e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | ||||||| | ||||| || |||||||||||||| || ||| Sbjct 72565 GACATCACTCCCATTCTCTGATATTAGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 72506 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| ||||| |||||||| |||||||||||| Sbjct 72505 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 72470 >seq303989 Length=535067 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 320200 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 320141 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||||||||| | Sbjct 320140 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 320081 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 320080 CTACAACACGTTCTCC 320065 Score = 109 bits (120), Expect = 5e-19 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || |||||| | Sbjct 322138 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 322080 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 322079 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 322020 Query 13643 CATAAAATCAAATGGATTT 13661 |||||| |||||||||||| Sbjct 322019 CATAAAGTCAAATGGATTT 322001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477706012442600