Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carlito_20syrichta_20[refseq_20GCF_5F000164805.1_202013-09-18] 337,189 sequences; 3,453,864,774 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq301619 286 3e-72 seq301777 194 2e-44 seq289273 167 2e-36 seq117952 159 3e-34 seq303989 120 3e-22 >seq301619 Length=432943 Score = 286 bits (316), Expect = 3e-72 Identities = 633/940 (67%), Gaps = 16/940 (2%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT--TAGAAATAACGCCCATTT 13369 || || ||| |||| || | |||| ||| || | ||| | || || || | ||| Sbjct 188343 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC--CGTTGGACTTGACATCACTCATATTC 188400 Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 | |||||||| | ||||| || ||||| |||||||| | ||||||||||| |||| | Sbjct 188401 TCTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCATTCCTTCCAGTGAAGTATTAT 188460 Query 13430 CCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 |||| || || ||||||||| | | || || || | |||| ||||| | | | Sbjct 188461 CCATCAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 188520 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 ||| ||||| | |||||| || ||||| ||||||| |||||||| || || || | Sbjct 188521 GTCTGTCAGCCACAAACTCGATGTATTGCTTCATTAAAATGCAATTCATCCCAATGAGCT 188580 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 | ||||| | | || | || || | |||||| || || | | | || || Sbjct 188581 TCACAGGCAAGGCTTCTGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATTATT- 188639 Query 13610 TCTTAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 |||| || | || | || || | | | || ||||| || || | || ||||| Sbjct 188640 TCTTT-TACTCTCTGCTCCGATGGTTTGTGTATCAGGTGTTTGAATATCAGGCAGGCAAA 188698 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||||| || | |||||||||||| ||||||||||| || | |||||| | || ||||| Sbjct 188699 GTCACAGTGTAAGCCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTGAGGCCAGGCAT 188758 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || ||||| ||| || | ||| ||||| | | || || || |||||| | || || || Sbjct 188759 CAGTCCTCATTTCTTGAGCCAGAATATCGATGTAAAAGAACCAGAAAAGCAGATGCCTTC 188818 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 ||||||||||| |||| | ||||||||| | | || | ||||| |||| Sbjct 188819 CACTGCAGCAAAGGCTACAACACGTTCTCCATAAGTAGCCTCTTTGTCCCCAGTCCAACG 188878 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 ||||| || | || || || | | || ||| || || || |||||||| | | Sbjct 188879 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 188938 Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| | ||||| | | |||||| || |||||||| | || ||||||||||| || Sbjct 188939 TTCCCTTTCTTTGGGGTCTTTAATGTAAGTGTCAATAAGGAGACTGTACATTTCAGAATG 188998 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 ||||||||| || || || || || ||||| ||||| | ||||||| ||| || || Sbjct 188999 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTC 189058 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | ||||| || ||||||||||||| || || ||||| || |||||||| || | Sbjct 189059 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGAAAGT 189118 Query 14088 C--AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT--CGGCTA 14143 | || | | | ||||| ||| ||| || || || || ||| | ||| | Sbjct 189119 CAGAACACGCGAT--ATAAAATATCTCTCCACAGGTTTCAGGGATTCCCAGTGCCGG--A 189174 Query 14144 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14203 || || | |||||| || || ||| |||||||||| || ||||||| | |||| Sbjct 189175 GGTCTTTGGTAAGATCAACCTCTTCAGCTGTCCAAAAGGAGGCCTCAGCTTTCGTGTACA 189234 Query 14204 TTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 | ||| || || | || |||||||| | ||||| Sbjct 189235 TCTGCCAGATGTCATGGTACTCGATAGGAAAGATGACAAA 189274 >seq301777 Length=185553 Score = 194 bits (214), Expect = 2e-44 Identities = 497/746 (67%), Gaps = 17/746 (2%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || | |||| | |||||| | | ||||| || ||||| |||||||| || ||| Sbjct 170357 GACATCACTCGCATTCTCTGATATCCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 170298 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 | |||||| ||||| ||| | || || |||||| || | | || || || | || Sbjct 170297 TTCAGTGAAATATTCTCCGTGAAGTCAAATGGACTTTCTACTTTGAAAACCTTGCTAAAA 170238 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 | ||||| | || | ||| | | | |||||| || ||| | ||||||| ||| Sbjct 170237 TCCAGTTCCAGTATAAGTCTGTTGCCCACAAACTCGATGTATGGCTTCATTAAAATGCAA 170178 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || | || || ||||| | | || | || || | |||||| ||| Sbjct 170177 TTCATCCCAGTGAGCTTCACAGGCAGGGCCTAGGTGAGGAACTCCTGTTCTATCCTAACA 170118 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCA--TTAGAAGGAGGATATTTTAGATGTTTAA 13651 || | | | || || |||| || | || | || || | | | || ||||| | Sbjct 170117 GCATTGATGATTATT-TCTTT-TACTCTCTGCTGTGACGGTTTGTGTATCAGGTGTTTGA 170060 Query 13652 AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTT---- 13707 | || | || ||||| ||||| || | | ||||||||| |||||||||| ||| Sbjct 170059 ATATCAGGCAGGCAAAGTCACAGTGTAAACTCTCATCTCTGCTAATAAGTTAGTTCACTG 170000 Query 13708 GAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT 13767 ||| |||| | || ||||||| |||| |||| || | ||| ||||| | || || Sbjct 169999 GAACATGTGAGGCCAGGCATCATTCCTTGTTTCTTGAGCCAGAATATCAATACAAAAGAA 169940 Query 13768 CCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAA-ACGATGC 13826 || |||||||| || || | ||||||||||| |||| | | |||||| | | || Sbjct 169939 CCAGAAAAGAAGATGCCTCCCACTGCAGCAAAGGCTACAACATGCTCTCCATTAAGTAGC 169880 Query 13827 TTTTTTGTT-TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTG 13885 | |||| ||| ||||| | ||||| | || ||||| | | | ||| | Sbjct 169879 CTCCTTGTCCTGA-ATCCAATGCAAGGCCCAACTTGCCTTCTTTTTGACACAGGGCATCG 169821 Query 13886 TTTCGATTGCATTGA--ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 | || || || |||| |||||| ||| ||| | ||| || |||||| || ||||| Sbjct 169820 TCTCAATGGCGTTGATGATAAAT--TCCCTCTTTGGAGTCTTT--AATGTAAGTGTCAAT 169765 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 ||| | || |||||||||| ||||||||||| || || || || || ||||| ||||| Sbjct 169764 AAGGAGACTGCACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACA 169705 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 ||||||| ||| || || | ||||| || ||||||||||||| || || Sbjct 169704 GTGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 169645 Query 14064 ACCATCACTAGCTGCAAAAAATGCCA 14089 |||||| | || |||| ||| || Sbjct 169644 GCCATCATTTGCAACAAACGATGGCA 169619 >seq289273 Length=322959 Score = 167 bits (184), Expect = 2e-36 Identities = 280/399 (70%), Gaps = 6/399 (2%) Strand=Plus/Plus Query 13694 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13753 |||||||||| || |||||||| || | | ||||| |||| |||| || | || |||| Sbjct 72671 TAATAAGTTCATTGGAAAATGTAAAGCTTCACATCAGTCCTTGTTTCTTGAGGCAGAATA 72730 Query 13754 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTT 13813 | | || || || || ||||||| || || || ||||||||||| |||| | | || Sbjct 72731 TCGATGCAAAAGAACCAAAAAAGAAGATGCCTTCTACTGCAGCAAAGGCTACAACACATT 72790 Query 13814 CTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 ||||||| | || | |||||| ||||| | ||||| || | ||||| || | Sbjct 72791 CTCCAAAAGTAGCCTCTTTGTTCCCAATCCAACCTAAGGCCCAATCTGCCTTTTTCTTGA 72850 Query 13874 TAAAATCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT--AGTACTTGAAA 13930 | || || || | || | ||||| | || |||||| ||||| ||| ||| || Sbjct 72851 CACAAGGCAACGTCTTAATGGTGTTGAAGAGAAATTTCCTT-TCTTTGCAGT-CTT-TAA 72907 Query 13931 TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAA 13990 |||| | |||||||| | || || |||||||| | ||||| ||| || || || || | Sbjct 72908 TGTAAATGTCAATAAGGAGACTGTATATTTCAGAATATATGTGTTCCATGGCAATTTGGA 72967 Query 13991 AACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGT 14050 | ||||| ||| | | |||||| ||| || || | ||||| ||| ||||| Sbjct 72968 ATCCATAGAAATAGCAGGCTTCTATAATTTGAACTTCTTGGCTAAATCACTCTACCAAGC 73027 Query 14051 TTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 ||||||| || || |||||||| |||||||| || |||| Sbjct 73028 TTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 73066 Score = 104 bits (114), Expect = 2e-17 Identities = 145/200 (73%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | ||||||| | ||||| || ||||| |||||||| || ||| Sbjct 72096 GACATCACTCCCATTCTCTGATATTAGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 72155 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| |||||||| || ||||||||| | | ||||| | || Sbjct 72156 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT---ACTCTGACTTTGCTAAAA 72212 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || ||||| | | | ||||||| | | ||||||||| ||||| | ||||| ||| Sbjct 72213 CC-AGTTCCAGCATAAGTCTATCAACCACAAACTCAATGTATTGCTTC-TTAAAGTGCAA 72270 Query 13534 TTCATACCTATTAGTTTTAC 13553 ||||| || || || || || Sbjct 72271 TTCATCCCAATGAGCTTCAC 72290 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | ||||||| | ||||| || ||||| |||||||| || ||| Sbjct 72565 GACATCACTCCCATTCTCTGATATTAGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCT 72506 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||||||| ||||| |||||||| || ||||||||| Sbjct 72505 TCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 72470 >seq117952 Length=1479372 Score = 159 bits (176), Expect = 3e-34 Identities = 306/451 (68%), Gaps = 0/451 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | ||||||| | ||||| || ||||| ||||| || | ||| Sbjct 1359828 GACATCACTCCCATTCTCTGATATTTGCCTACTCTCTTCTCAAAGAAGTTTGTCTCTCCT 1359887 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA 13473 |||||||| ||||| ||||| || || ||||||||| | | || || || | || Sbjct 1359888 TCCAGTGAAATATTCTCCATGAAGTCAAATGGATTTTCTACTTTGAAAACCTTGCTAAAA 1359947 Query 13474 CCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAA 13533 || ||||| | | | |||||| || | |||||| || ||||| |||||| ||| Sbjct 1359948 CCCAGTTCCAGCATAAGTCTATCGGCCACAAACTCGATGTATTGCTTCATTAAGATGCAA 1360007 Query 13534 TTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACA 13593 ||||| || || || || ||||| | | || || || | |||||| ||| Sbjct 1360008 TTCATCCCAATGAGCTTCACAGGCAAGGCCTCGGTGGGGAACTCCTGTTCTATCCTGACA 1360067 Query 13594 GCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 || | | | || || || | | | | | || | | | || ||||| || Sbjct 1360068 GCATTGATGATTATTTCTTTTACTCTTTGCTCCAATGGTTTGTGTGTCAGGTGTTTGAAC 1360127 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 || | || ||||| ||||| || | |||||| |||| |||||||||| | |||||| Sbjct 1360128 ATCAGGCAGGCAAAGTCACAGTGTAAACCCTCAACTCTGTTAATAAGTTCACTGGAAAAT 1360187 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || | || ||||||| |||| |||| || | ||| ||||| | || || || || ||| Sbjct 1360188 GTGAGACCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCAGAA 1360247 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTA 13804 ||||| || || || | ||||||||| |||| Sbjct 1360248 AAGAAGATGCCTTCCATTGCAGCAAAGGCTA 1360278 Score = 127 bits (140), Expect = 2e-24 Identities = 276/399 (69%), Gaps = 18/399 (5%) Strand=Plus/Plus Query 13853 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA-AATGTTCC 13911 |||| || | || ||||| | | || |||| || || || |||||||| | || |||| Sbjct 1360513 CCCAATCTGCCTTCTTTTTGACACAAGCCATCGTCTCAATGGCATTGAAGAGAAATTTCC 1360572 Query 13912 TTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || ||||| ||| ||| || || || |||||||| | ||| |||| |||| |||| Sbjct 1360573 TT-TCTTTGCAGT-CTTTAATGTTAAGTGTCAATAAGGAGACTA--CATTCCAGAATGTA 1360628 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-C 14028 ||||||| | ||| || || || ||||| ||| | | |||||||| ||| || || Sbjct 1360629 TGTTTTCCACAGCAATTTGGAAGCCATAGAAATAGCGAGCTTCTGTAACTTGAACTTCTT 1360688 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC- 14087 || | ||||| || |||||||||||| || || ||||| || |||||||| || || Sbjct 1360689 GACT-AAATCACTC-CACAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCC 1360746 Query 14088 -CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCT--AA 14144 ||| ||| | ||||| | | ||| ||| || || || ||| | ||| | Sbjct 1360747 ACAACATGCGAT--ATAAAATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGGAG 1360802 Query 14145 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 ||||| |||||||| || | || ||||||||| || ||||||| |||||||| Sbjct 1360803 GTCCTTGGAAAGATCAACCTTCTCGGTTGTCCAAAAGGAGGCCTCAGCTTTCTTATACAT 1360862 Query 14205 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||| || || | ||| |||||||| | ||||| Sbjct 1360863 CTGCCAAATGTCATGGTATTCCATAGGAAAGATGACAAA 1360901 >seq303989 Length=535067 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 320200 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 320141 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 320140 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 320081 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | |||||||| Sbjct 320080 CTACAACACGTTCTCC 320065 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || |||||| | Sbjct 322138 TAGAAGTCAGCATCCAAAGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATTCT 322080 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 322079 CTGATATTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 322020 Query 13431 CATAAAATCGAATGGATTT 13449 |||||| || ||||||||| Sbjct 322019 CATAAAGTCAAATGGATTT 322001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476571614013960